GgaINT0010710 @ galGal4
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
myosin-7B [Source:RefSeq peptide;Acc:NP_989918]
Coordinates
chr20:2953378-2954022:-
Coord C1 exon
chr20:2953935-2954022
Coord A exon
chr20:2953496-2953934
Coord C2 exon
chr20:2953378-2953495
Length
439 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
GTCCCTACTCTCCCCCCTAGGAG
3' ss Score
10.24
Exon sequences
Seq C1 exon
GAGAATCTTAACAAGCTGATGACCAACCTGCGCTCCACTCAGCCCCACTTTGTCCGCTGCATCATCCCCAATGAGACAAAGACCCCAG
Seq A exon
GTATGCATGGACTGAGACAGCACCCTGGCAACTCCTCCTGACAGGGACTCCTGCCCCACTCCTGTACCCACCTGCTACCCAGTCCTTTTCTCACAGCAGTTCTGCTGCTGCTGAGACCTGGCTCCATCTCTGCGGAAACCACTGCGACCCTTGCAAATCTCCTCTACTAGGGATGAAGTTTTGCCAGGCTCCCAGCTGGGCTGCATGCTGGCAGCTGGGCTGCCATGCACTTGTTTGACATCAGGCATAGATGAATTTTTCAGACTGACTTCTGTCCTCTTGGGCCTGGGCTGCAGCACTGGTGCTCAGTGTAGGCTTACAGAACAGCTCAACGCCTGTGCTCCCACAACAACCCCCATAGGCTGTTTGCAAAGTTCAGGCCATGCTTCCCCCATCCTCTTGGGCTGAGTATTTCCTCTGTCCCTACTCTCCCCCCTAG
Seq C2 exon
GAGCCATGGATGCCTTTCTGGTGCTGCACCAGCTGCGGTGTAACGGTGTCCTTGAAGGTATCCGCATCTGCCGTAAGGGATTTCCCAACAGGATCCTCTACGCAGACTTCAAGCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000012499:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAATCTTAACAAGCTGATGACCA
R:
CGCTGCTTGAAGTCTGCGTAG
Band lengths:
206-645
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]