BtaINT0097361 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64900826-64901195:+
Coord C1 exon
chr13:64900826-64900913
Coord A exon
chr13:64900914-64901077
Coord C2 exon
chr13:64901078-64901195
Length
164 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTC
5' ss Score
5.3
3' ss Seq
TTAACCTCCACTGTGCCCAGGGG
3' ss Score
6.84
Exon sequences
Seq C1 exon
GAGAACCTCAACAAGCTGATGACCAATCTGCGGGCCACGCAGCCCCACTTTGTCCGTTGCATCGTCCCAAATGAGAACAAGACCCCAG
Seq A exon
GTAGTCACCCCAGGGGGGCTGGTTCCCCATGGGGGGACATGGGAGGGAGGGGATGGGGTGGCCAGAGCTGGGTCACCCCTCTCCACAGGGCTTGTGCGGCCTCGAATTCATGAAGGTGTGTCCCCTGACCGCTAGTCTTTTCCTTTAACCTCCACTGTGCCCAG
Seq C2 exon
GGGTCATGGACGCCTTCCTGGTGCTGCACCAGTTGCGCTGCAATGGGGTGCTGGAGGGGATCCGGATCTGCCGACAGGGGTTCCCCAACAGGCTGCTCTACACTGACTTCCGGCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512:ENSBTAT00000039242:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCTCAACAAGCTGATGACCA
R:
CTGCCGGAAGTCAGTGTAGAG
Band lengths:
202-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development