DreINT0099887 @ danRer10
Intron Retention
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24958784-24959199:-
Coord C1 exon
chr11:24959023-24959199
Coord A exon
chr11:24958930-24959022
Coord C2 exon
chr11:24958784-24958929
Length
93 bp
Sequences
Splice sites
5' ss Seq
GATGTATGT
5' ss Score
6.31
3' ss Seq
CTATAATGCCTTTGTTTTAGTTG
3' ss Score
6.42
Exon sequences
Seq C1 exon
GTGAAGAATCTGATAGAAGAGATGGCAGCTTTGGATGAAACTATACTGAAGCTCACCAAAGAGAAAAAAGCCCTACAGGAGAGTCACCAGCAGACCTTGGACGACTTGCAGACAGAGGAAGACAAAGTCAATACTCTGACTAAGGCCAAAGCCAAGTTGGAGCAGCAAGTTGATGAT
Seq A exon
GTATGTTCATTTGCTGGATAAATAGTAACAGGACTGTTAATGGGTCTAGAATGAGTCAGGAATCAGTAATCCACTATAATGCCTTTGTTTTAG
Seq C2 exon
TTGGAGGGCTCCTTAGAACAGGAAAAGAAATTGCGAATGGATCTGGAACGTTCAAAACGCAAGCTGGAGGGCGATCTGAAGCTGTCAATGGAGTCTGTCATGGACCTCGAAAATGACAAGCAGCAATTAGAGGAAAAGCTAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075:ENSDART00000097316:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.508 A=NA C2=0.796
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(29.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(1.0=4.1),PF0157614=Myosin_tail_1=PU(1.6=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTTGGACGACTTGCAGAC
R:
ATTGACAGCTTCAGATCGCCC
Band lengths:
174-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]