GgaINT0010716 @ galGal4
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
myosin-7B [Source:RefSeq peptide;Acc:NP_989918]
Coordinates
chr20:2949201-2949872:-
Coord C1 exon
chr20:2949696-2949872
Coord A exon
chr20:2949347-2949695
Coord C2 exon
chr20:2949201-2949346
Length
349 bp
Sequences
Splice sites
5' ss Seq
GACGTGAGT
5' ss Score
9.22
3' ss Seq
TCTTGCCCTCTGTTCTCCAGCTG
3' ss Score
9.14
Exon sequences
Seq C1 exon
GTTAAAAACCTGATTGAGGAGATGGCTGCTCTGGATGAGATTATTGCCAAGCTGACAAAAGAGAAGAAAGCACTACAAGAGGCCCATCAACAGGCCCTGGATGACTTGCAGGCTGAGGAAGATAAAGTCAACACGCTGACCAAAGCCAAGGTCAAACTGGAACAGCAAGTGGATGAC
Seq A exon
GTGAGTCGTGGGCCAGTGACAGCGAAGTGATAGTGGTTTGAGTCACGCACCTCTGGGAGAGCAAATGGGCTGCCAATGAGTGGAGTCTGGAAAGCGTGGTGATTATTGATTCCAATGCAATAAGGCCAGCTGGTGAGCAACCTCATTGACAGACTGCCCCTAAACCAAGGAGTGGCCCAGGGTACCCCTATGGAGAGCAGCCCTGGGCTGAGGGAGAGGAACAGGAGGCCAACTGGGAAACAGCTATGGCTCTCAGGGCTGGGTGAAGTTCCCAAGCAATGGGTATGGGGAAGGTCAGGCACTGCAGGGGGTTTTCTCCCTCCCTAGCCTCTTGCCCTCTGTTCTCCAG
Seq C2 exon
CTGGAAAGCTCTCTTGAACAAGAGAAGAAAATCCGCATGGACCTGGAAAGAGCTAAGAGGAAGCTTGAAGGAGATCTGAAGCTGACACAGGAGTCTGTGATGGATCTGGAGAATGACAAGCAGCAACTGGAGGAGAAACTCAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000012499:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.390 A=NA C2=0.561
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(29.7=96.6),PF0157614=Myosin_tail_1=PU(47.1=54.2)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(50.0=69.4),PF0157614=Myosin_tail_1=PU(1.6=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAACCTGATTGAGGAGATGGCT
R:
TTTGAGTTTCTCCTCCAGTTGCT
Band lengths:
318-667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]