RnoINT0096565 @ rn6
Intron Retention
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151144746-151145150:+
Coord C1 exon
chr3:151144746-151144922
Coord A exon
chr3:151144923-151145004
Coord C2 exon
chr3:151145005-151145150
Length
82 bp
Sequences
Splice sites
5' ss Seq
GACGTGAGT
5' ss Score
9.22
3' ss Seq
AGCCCTACTCTACCCCACAGCTG
3' ss Score
6.66
Exon sequences
Seq C1 exon
GTGAAGAACCTGACAGAGGAGATGGCTGCCCTGGACGAGTCCGTGGTCCGCCTGACTAAGGAGAAGAAGGCGTTGCAGGAGGCTCACCAGCAGGCTCTGGGTGACCTGCAGGCTGAAGAGGACCGTGTGAGTGCGCTGGCCAAGGCCAAGATCCGGTTGGAGCAGCAAGTAGAGGAC
Seq A exon
GTGAGTTGGAGTCTCTTGGGGGGCTGTCGGGGTGGACAGTCACCTTGGCTTGCTCGAAGCTGAGCCCTACTCTACCCCACAG
Seq C2 exon
CTGGAGTGCTCCCTGGAGCAAGAGAAGAAGCTTCGCATGGATACAGAACGTGCCAAGCGCAAGCTCGAAGGAGACCTGAAGCTGACGCAGGAGACAGTGACAGACACCACACAAGACAAGCAGCAGCTGGAGGAGAAGTTGAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997:ENSRNOT00000025859:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.390 A=NA C2=0.816
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(25.1=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(15.6=73.5),PF0157614=Myosin_tail_1=PU(1.6=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGAAGAAGGCGTTGCAG
R:
TGGCACGTTCTGTATCCATGC
Band lengths:
175-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]