HsaINT0107896 @ hg38
Intron Retention
Gene
ENSG00000078814 | MYH7B
Description
myosin heavy chain 7B [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr20:34996346-34996758:+
Coord C1 exon
chr20:34996346-34996522
Coord A exon
chr20:34996523-34996612
Coord C2 exon
chr20:34996613-34996758
Length
90 bp
Sequences
Splice sites
5' ss Seq
GACGTGAGT
5' ss Score
9.22
3' ss Seq
CTGCTGTGCCTGCTCTGCAGCTG
3' ss Score
8.9
Exon sequences
Seq C1 exon
GTGAAGAACCTGACGGAAGAGATGGCTGCGCTGGACGAGTCAGTGGCCCGGCTGACCAAGGAGAAGAAGGCGTTGCAGGAGGCCCACCAACAGGCCCTGGGTGACCTGCAGGCCGAGGAGGACCGTGTGAGCGCGCTGACCAAGGCCAAGCTCCGGCTGGAGCAACAGGTGGAGGAC
Seq A exon
GTGAGTCAGGGCCACCCCGAGACTGGGTGGCGGGGCCGGGGTGCCGGCTGGCTTGGGCCATGGCTGACCCCTGCTGTGCCTGCTCTGCAG
Seq C2 exon
CTGGAATGCTCCCTGGAGCAGGAGAAGAAGCTGCGCATGGACACGGAGCGGGCCAAGCGCAAGCTGGAGGGTGACCTGAAGCTGACGCAGGAGTCGGTGGCTGATGCTGCTCAAGACAAGCAGCAGCTGGAGGAGAAGCTCAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078814:ENST00000262873:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.627 A=NA C2=0.918
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(26.1=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(11.7=53.1),PF0157614=Myosin_tail_1=PU(1.6=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGCAACAGGTGGAGGA
R:
TTCTTGAGCTTCTCCTCCAGC
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development