HsaINT0107896 @ hg19
Intron Retention
Gene
ENSG00000078814 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:15906]
Coordinates
chr20:33584149-33584561:+
Coord C1 exon
chr20:33584149-33584325
Coord A exon
chr20:33584326-33584415
Coord C2 exon
chr20:33584416-33584561
Length
90 bp
Sequences
Splice sites
5' ss Seq
GACGTGAGT
5' ss Score
9.22
3' ss Seq
CTGCTGTGCCTGCTCTGCAGCTG
3' ss Score
8.9
Exon sequences
Seq C1 exon
GTGAAGAACCTGACGGAAGAGATGGCTGCGCTGGACGAGTCAGTGGCCCGGCTGACCAAGGAGAAGAAGGCGTTGCAGGAGGCCCACCAACAGGCCCTGGGTGACCTGCAGGCCGAGGAGGACCGTGTGAGCGCGCTGACCAAGGCCAAGCTCCGGCTGGAGCAACAGGTGGAGGAC
Seq A exon
GTGAGTCAGGGCCACCCCGAGACTGGGTGGCGGGGCCGGGGTGCCGGCTGGCTTGGGCCATGGCTGACCCCTGCTGTGCCTGCTCTGCAG
Seq C2 exon
CTGGAATGCTCCCTGGAGCAGGAGAAGAAGCTGCGCATGGACACGGAGCGGGCCAAGCGCAAGCTGGAGGGTGACCTGAAGCTGACGCAGGAGTCGGTGGCTGATGCTGCTCAAGACAAGCAGCAGCTGGAGGAGAAGCTCAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078814-MYH7B:NM_020884:29
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.627 A=NA C2=0.918
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(25.8=100),PF045827=Reo_sigmaC=FE(44.3=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(12.9=59.2),PF045827=Reo_sigmaC=PD(3.1=8.2),PF0157614=Myosin_tail_1=PU(1.6=28.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGCAACAGGTGGAGGA
R:
TTCTTGAGCTTCTCCTCCAGC
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)