DreINT0099949 @ danRer10
Intron Retention
Gene
ENSDARG00000035322 | myh7bb
Description
myosin, heavy chain 7B, cardiac muscle, beta b [Source:ZFIN;Acc:ZDB-GENE-090311-5]
Coordinates
chr23:18798543-18799242:+
Coord C1 exon
chr23:18798543-18798639
Coord A exon
chr23:18798640-18799149
Coord C2 exon
chr23:18799150-18799242
Length
510 bp
Sequences
Splice sites
5' ss Seq
GGAGTAAGA
5' ss Score
4.36
3' ss Seq
TTGGTTCTCAACATAAACAGGGT
3' ss Score
4.67
Exon sequences
Seq C1 exon
CGGAGAATCCGGTGCTGGCAAAACTGTCAACACGAAACGTGTAATTCAGTATTTTGCCATTATAGCTGCTCTTGGCGAAGCAGGGGGCAAAAAAGGA
Seq A exon
GTAAGAGCAGAAACTTCACTTCTGTGCTTTTTTGTCATCACCCATCCTTTTCCCTTGTTTTTTGTTTCCCCATGAGTCTTTCTTTTGATCCTCTACATCTTGTTTTTGGGGATTTTTAATCATGTCTGAATGTTTATATATTCCTTTTGGATTTACAGACATCCTTTTAACCAATAAGGAGTGACCCTCAGAGTTTTGTTACCCTACGTTTTGTATTCCCGTTCCAGTATGTTTTTATAAACCCTTTTTTATACCACTCTTTACATTGCTCAATCCCTTTTTTGCAATGTCTTCCATTTTGCCTCTTGTTTTTAACATTTTAAGCTCCTTTTTAATTCTTGTCTATTTTTTTTTTTTTTTTTTTGGGAAAACTGCTTGATTTCATCTACTTTCCCCTCAATCATGATAGATAATATTTCATTTCCATTAGCTTGTTCCACCCAACTCATAGATATCAATGTTGGTGTTTGATTGCAAACTTACACATTTCTTGGTTCTCAACATAAACAG
Seq C2 exon
GGTACATTAGAAGATCAGATCATTGAGGCCAACCCGGCTATGGAAGCTTTTGGCAATGCAAAAACCCTGAGGAATGACAACTCATCCCGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035322:ENSDART00000137438:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(26.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAATCCGGTGCTGGCAAAA
R:
GGATGAGTTGTCATTCCTCAGGG
Band lengths:
182-692
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]