DreINT0099975 @ danRer10
Intron Retention
Gene
ENSDARG00000063295 | myh9a
Description
myosin, heavy chain 9a, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030131-5870]
Coordinates
chr6:7589777-7590990:-
Coord C1 exon
chr6:7590742-7590990
Coord A exon
chr6:7589990-7590741
Coord C2 exon
chr6:7589777-7589989
Length
752 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAG
5' ss Score
7.1
3' ss Seq
TGATGCTCAAATTTTTACAGATG
3' ss Score
7.85
Exon sequences
Seq C1 exon
TTGGCAGAGATGAAGAAAAAGATTGAGCAAGAGGCACAGAGCCTGGAAAGCATGGAGGATGGGAAGAAGAAATTGCAGAGGGAGGTGGAAAGTGTCCTGCAGCAGTTGGAGGAGAGAAATGCCAGCTACGATAAACTGGATAAGACCAAGACACGTCTGCAGCGGGAGCTTGATGATGTCCTGGTTGACCAGGGTCACCTCCGGCAGACAGTGCAGGAACTTGAACGCAAACAGAAGAAGTTTGACCAG
Seq A exon
GTAGAGGACTTATTTTCAGAAAATTGCTTTTTTGCGAGTGAAAAAGAGCATAGAAGTAGGCTTGTGAAGGTTTTGCACACATACACTTTGAAATTTAACATTGTTATACAAAATAAATAAAACAATATATTGTATTCCACATACAAAAATACATAAGTACACATCAATCAATCAGTAGAGAGAGAGGGATTTGCTTGTGCCAGTGTATGGTTTTGTTCCAGAAACTGTATAAACAGATCCCAAATTTGATAGTACTCTTTTAATTGGCCCTTATACTGTAGGTAATTCTTTCCAGAGTAATGTAATGTCAAATCTTTCAGCCAGTGGTCAATGGATTGACTTTCTATTTTCTTCCAACGAAGTTCTATCAAACCTCTTGCAATAAGACACATGTCAATCATTTTAGTTACAGACTTCTAGGAAATAAACCCAAAGTACGTATTTCAGGGGTTACTGGAATTGTTTTTATAATTGAGTGAATTAATATTCTTAAAAGGCACTGTTTAAAAATAAAGTAATTATTCACAGTATTTTAAAATGCCTGTGATTTATCAATGTTGTGGATGTTCATCACGGGTATACATCAACAAGTTTACTGCGGCGACGTGCAACATTACTTTAGATCAATCAAGCATTCTCAGTAGCCATATCTAGACATTTCGAACACCTATTCTTGATGCTTTTTATTTATTTATTTATTTTTTTTTATTGGTTTGATTGCCTTAACAAACTTGATGCTCAAATTTTTACAG
Seq C2 exon
ATGCTTGCAGAGGAGAAGAGCATCTCCACAAAGTACGCTGAGGAGAGGGATCGTGCTGAAGCAGAGGCCCGTGAGAAAGAGACCAAATCCCTGACTCTGGCCCGAGAGCTGGAGGCCATGACTGACCTGAAGAATGAACTGGAGCGGGTCAACAAGCAGCTCAAAACCGAGATGGAGGACCTGGTGTCATCTAAGGATGATGCTGGCAAGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063295:ENSDART00000149823:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.832 A=NA C2=0.958
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(9.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAGTGTCCTGCAGCAGTT
R:
TGACACCAGGTCCTCCATCTC
Band lengths:
352-1104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]