DreINT0099985 @ danRer10
Intron Retention
Gene
ENSDARG00000063295 | myh9a
Description
myosin, heavy chain 9a, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030131-5870]
Coordinates
chr6:7607102-7607799:-
Coord C1 exon
chr6:7607706-7607799
Coord A exon
chr6:7607123-7607705
Coord C2 exon
chr6:7607102-7607122
Length
583 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TCTCTGTTTTCATCCCCCAGAGC
3' ss Score
10.87
Exon sequences
Seq C1 exon
GGGTGAATCTGGTGCTGGAAAAACCGAAAACACCAAAAAAGTCATTCAGTACCTCGCTTATGTTGCATCATCCTTCAAAACAAAGAAAGATCAA
Seq A exon
GTGAGTACAGACTTACTTTTTCCCTCTGTGTTGGATTGATGGTGTGTGCATGACATGCAGTAGTATATTCACAGGATTTCAGTTTTGAATCTGTCATGCTCTTGTGTGCAAGGTGGATTTAGAGTCAATGTTGATTTGTGTGCACAACTGACAGATAAAGCTGATCGTCATGATGGAGCCGCTCATAAATAATAAACCACATCCATTTTTAATATCGCCTATCCTGTGTACAGCCCCACAGTTGATGTCAGACTTATCTTTTCCTGTTTTCTGTCCATTTTTTTTTTTTTCTGTCAAAGTCTTCCTCCCTCATTCTTTGAGTTTAAAATTCCCCTCTCTACTGTTCAGACCAGGAAGTCAGATTTATTTTCACATTCCTGTATCAGGTCTAGACCTGTTCCCACTGGGTCTGTAATCATTTTGTGAATACCTGCATATTTGCTCGTGGTTGATAATATACTAAGCCCTTTTTACTGTTAAAGCCTCCTGCTGTTCTGTCACACCAGCATTTTAAAAAAGCTGGAGCCCACTAAACTTTTGTGCCTGTATTTTGAGACTTTCTCTCTCTGTTTTCATCCCCCAG
Seq C2 exon
AGCAGTATCGCCCTGTCACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063295:ENSDART00000149823:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(20.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(0.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]