BtaINT0097425 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010402 | MYH9
Description
Bos taurus myosin, heavy chain 9, non-muscle (MYH9), mRNA. [Source:RefSeq mRNA;Acc:NM_001192762]
Coordinates
chr5:75126567-75130859:-
Coord C1 exon
chr5:75130766-75130859
Coord A exon
chr5:75126660-75130765
Coord C2 exon
chr5:75126567-75126659
Length
4106 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GCCTCTGGGTTCCTTTCCAGGGT
3' ss Score
9.51
Exon sequences
Seq C1 exon
GGGTGAGTCTGGAGCTGGCAAGACGGAGAACACCAAGAAAGTCATTCAGTACCTGGCTCACGTGGCCTCATCACACAAGAGCAAGAAGGACCAG
Seq A exon
GTGAGTGTGGTCTTCCTCCCCACGGACGTGCCTGGTTTCCCTAAGGGAGAGCACTTAATGATCCATGGCTTGGCGTTTGGGGGACTGAAGTAGAGGCCAGGCCCACTTTCCTTGAGACTGCGTCCTGGCCTTCCTGGGAGTGGGTCTGGTGAGAGCCAGCCCATTTCCTCCTTGACCGGCCCTAACTGTGAGTTGCTGTGGAAACTGGAGACTGCTGGAAGTTTGCAGCCCATGCTGTGTGTCCTCCACTTCTGAGGTTGGAAGACAGATTCCAAAGCTTGGTTCTCAAGTCAATGGAGACTTGAAGGATCTCGGGCAGGCCGGCATTGGAACCCCTGCTTCTGTTCCCTGGTGTTGAAATGCCTCTGGGTGGACAGCCCCCAGCGAAGAGAGAAAAGGCAGCTGCAAAGTCATCTCACTTCCCTTTTTTTCCCCCTCTCCCCCTTGGTGGACTGTGGTCGAACCCAGCGGTGTCCTCGCTAGGTGAGCTGCACGTTTACTGCACGTTGTACACCAGGAATGTGTGTTCTGCCCATCGTGTGCCCTTGAATTACGATTTTTTTCTAAGCAGCTTTTCACTCCACACCATTGTCACTCTCTGCGGCTAGACCTCTTCTTATAGGCTCGGTTCACTGACTCTCTTGGGACAAGGGGCTGGGTTGTGACACACGGTGATCTCGCGTGCACTCTGCAATGACAGCCCCAGCAGGAAGGGGACCAGTCTCACCACCTAGCTGTTCTCAGAAGCTCAGAGTTCCCATGCGCATGAGGGCCAGAAGTCCCTGTGCGGAGCCCTGACCGAGGCACAGCGGAGTGAGCATCTGCCTGACCAGACCCCCACACGTTCAGCGTGCTGGACCAGATGGGGTGGGCGGCCCTTACTGCACTGGCTGGAAGCAGTGCCAAGAATCTGCTCACTGGGCTTCCCCAGAGTGGGGTGTGGTCAGTCTGAAGCATGCCCGTGTGGTGCTCTCTCTGTCTCTCAAGTACACACTCTTGAACTTCCCTATGAAATCTAAGTGCCACTGGGGTCCCCTACAGCCATCTGGGCGCCCCCCACTTCCCAGGGCGCCATGTGCAGCGTGTGTAAGTAAGTAGCGGTGTGTGTCTCCTTGCATGCAGACCTGGGGTGTGTCCTGCAGAATGTTCTAAAGAGCATAGTCTTCTGGAATCAAACCAGAAGTGACTTTTCATGCGCCAGACTTTGCCAGACATTCTGAATCTTTTTCCAAGGGGTGTCAGGAGTTATATTTAGAAACGAGTAAAGTTTTCTTTTGCTGTCTCTCTCTACCCTCCCCTTCCCCCATTTTCCATTCTTTTTTAAGGGACCTATTTTAAAAACAGGCCTGGGGAGGTTAGGAGTTCTCTAGCTGCGGTTTTCCATCTCTGGATTTGCAGGAAAATCCATTTCCCAACTACTGGTTGAATGCCTAGTATGTGTCTGGATCTCCAGAGGGTGGTCTTGGTGTCGCTGCCCTGTGGGACAGGACGGGGGACCACAGTTACAGAGCAGTGACGCCGACCCACGTGCGTTATGTCTGGGGCTGATCCGTCTGCAGGTGCGGGGAGAGGCAGGCCCCCAGCACTCAGGACGGCATGTGAGAGCTGTGACGAGTGGAGGCGAACTTGTCACGTCCTCGTTCTCAGGCTGCTGTGTGATGGGCACCCAGTACCCAGCTCCAAGTTCAACTCGAATGATTGAATAGGTTGCCCTTGGCTTCCCACGACCGTCCAGGCCCTCAGTTGTAAAGGCCATTGACCAGTTTGTTTGATTTCCTCGCCTGAAGCTGTGCAGTGATTTTGCGCACACACCTAGGCCACGAGACACTCTTGACTTGGTTTGTGCCTTGTGTTCTAGGCCTGTTGTGGCATACGCTGGGGAGCTTGCTCCCCGCAGTGACCCAAGTGCTCATCCCAAGAACACCCATTCGGATACCCCAAACCTCAGCTTATGGGGGTCCAGGCTTTGGCCAGATGGCAAGCTGGCAAAGCAGCACTGGGTGAAGGGACTTTCCAGATGGACTTCTGGAGTCTGAACAGCGACCTCTGATGCTCTTCCTCCCTCTGGTTTTTGTGTACTAGTTGGAGGCCCGTGGCAGAAACTCCACCCAGGGAAGCCCTTCAGAGAGCATGCAGATAATCCCAAACCTCACAAGCACATGCTGCCTATAGCAGTGCCTCAGAATTTCACCATATGCAGGTTTCATTGACAAATAAAGGTCTCTGCTGTGCCCGGTTAGGCATCAATGAAGAGAAACCTGTAGGTTAGCCGCCACCATTCAGTTCAGCTGAGTTCAGCTCAGGACTCCGAGCTGGTCGCTCTTGGGTTGGCCTGGTGGCCCCACGTTTCCACAGCAGCAGCCTGTGTCCCCAACAGAGGCCTTAGCTTTGCGTCTAAGCAGGCTGCCTGCTCCGGTGGGGACCAAGCTCCCACCTGACTGGGAACAGGAGTGGCTCGGCCAGCCTGGCCGCCTGGCCTGTGCTTGGAGAAGGTGTTTTAGTGAGTGGGGGAGCAGCGCTCAAACCAACTCTGGATCCGTGGGCTGCCTCGCTGTCTTCCCAGCCCGTCTGAGCCTAGGGGATGGAAGCCAATGTCCTGTGACTGCTGGTGCCCTGCACTCCTGTAGGGCCTGCTCTGTGGGCTTGACCTCTGCCCCTTGACCTGGCTGCACTGACCCTCCTCCACATTATCTATACAGTCCAAAATCAAGACTCTCCAACCCTGGGAGGATCTCTGACCAGGGATGGCTGTAGTGGGGCCCCCTCCAGTCGCTGGTGGCCTTTCCAGACCCCAGAGCATCCTCGGTGTTCTGTAGACTTATGTACAGAATGGTGTGCCTGAGGGGCCTTGTGTGCCGCAGGCGTCCCTGGGACGCTGTAGCTCATGGCTCTTTGGGGAGCACCTGCCGCCAGTTCTCCCTTTCATCACAGATTACAGGCAGGCAGCCTTTATTCTCAGAAAGTCCTGGCTTGACTCCAGCCCTGCCGATAAATTAGAAAACCCCACCTGGCCCTTGTGTGATGTGCTGTCTCCCTAGAGTGCCCAGGTATTAAGGTGAACAAGAGCCGTCTTTTCCTCAGGCAGTGTCAGTTATTACCTGGCCTGCCAGGAGGATGATAACTGCTTCCAAAGTCCTGCCCACCTGATAGCAGGGAGATCCCCAGGTAGGGCTGGGGCGTGGCGAGAGATGGTGTGGTAACTGATAGGTGTGAGGTAGAAACCTTGAATTCGATGACCTGCTTTGCTGGATGATGGCTGGATGACCTCGGGCAATTCATTCCCCTTCCCTCAACTTTAGTTTTCTCTTCTGTGGAATGGGGCTAGTCTTGTATTTCCTACTCTAAGTATCACGAGGACCCAAGGATAAGAAGGCGTAAATAAGGGGACATTTTTGCCAACCACCAAGTATCATGAGACTGTAGTAGGGCTTATTGATGTTATCAGTAAATAATTAGAACTGAAAGTGGGCCTTGCTCATCCCATGCCCAGACACCTGACTTGCTGGGAACAGGTTTGGGGGGTGGGGGGGCTTGGGGAGTAGCAGGACAGGGGACCAGCAGGGAAAATGCAGAGTTTATTAGGACACAGATGTGACCAGGTGGGGTCTTGCAGATCTGGTTCCCTCTCTCCTTGTCCTATGAAAAGGGAAAATTTTTTTGTGGGCTGTTGGGTGGGGAGTAGAGGTCCGGGGGGCAGAGGAAGGGCAGCGTCCTGGATGGAAACGATCCAGGGGAAGGATTGATGCCTCTGTGTCTTTTCTTATTTCAAGTGCTGCTTCCTAGTGCATCCTCCAGGGCTGATCCAGGCCGTCCCACCAGGTCCCCGAGCTGGATGGGCAGCCTGCTTTCCCTTTCTAGGGCTGCTGGTTGGTTAGCCCAGGAAGCAAGTTCAAGTCAGGCAGCGTTTCCAGACATCTGGCAAAAAGGTTGCTCTGGAGTGACACTGGGGACCAGGCCAAGGCCGGTGTGGTTGGAGTCCGGAAGCCCCCATCCCTGGCACGTGGGGTGTGTGGGCACAGCTCTGCCGCCTCCCCTCCGCCTGGCAGAGCACGTCTGGCAGCCGCGCCACTGCCTGGCCCTCACCATGCCTCTGGGTTCCTTTCCAG
Seq C2 exon
GGTGAGCTGGAGCGGCAGCTGCTGCAGGCCAACCCCATCCTGGAGGCCTTCGGGAACGCCAAGACTGTCAAGAACGACAACTCTTCTCGATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010402:ENSBTAT00000013737:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(25.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]