HsaINT0107992 @ hg38
Intron Retention
Gene
ENSG00000100345 | MYH9
Description
myosin heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:7579]
Coordinates
chr22:36322429-36326661:-
Coord C1 exon
chr22:36326568-36326661
Coord A exon
chr22:36322522-36326567
Coord C2 exon
chr22:36322429-36322521
Length
4046 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CGTCCCTGGGTTCCTTGCAGGGC
3' ss Score
9.65
Exon sequences
Seq C1 exon
TGGTGAATCTGGAGCTGGCAAGACGGAGAACACCAAGAAGGTCATCCAGTATCTGGCGTACGTGGCGTCCTCGCACAAGAGCAAGAAGGACCAG
Seq A exon
GTGAGTGCTGCAGCCCTTGTCCCTGTGGCCGCCTGCTTGGCCTTGGTGGGATGATGGAGGAAGAGCACTTAGTGGTCCCGGCTTCAGCTTTACAAGAGGATGCTTTGGGGAATGAAGCAGAGGCTGGGCCCATTTCCATTGAGGCAGTGGCGTGGCCTGTCCTGGGAGTGGTCCAGCGGTAGCAAGCCCATTCCATCCTTGGCCTCCTAGCCTTCTGAGTTGCTATGGAAACTGGCGAGGTCCTGGAGTTTGCATGGCAGCCCTCTTGGCTTTTGCAGCTCGTTGCTGTGTGTCCTCCCCTTCTGAGGCTGGAAGGCAGATTCCAAGACTTGGTCCTCAAGTTGATGGAGGCTTGAAAGGTCTCAGGCAGACCTGTATTTGATTCCATTTCTTTTCCCTGCTGTTGAAATGCCTCTGGGTGGACAGCCACCCACCCCCACCACCCCAGCGAAGACAGAAAGGGCAATTGGAAAGTCATCTCACCTCCATTTTTTTCCTCTCCCTTTTGATGGATTATGGTTGAACCCAGCAGTGTCCTCGCTAGGTGAGCTGCACGTTTACTGCACGTTCTGCACTGGGAATGCGTGTTCTGCCCATCGTGTGCCCTTGAATTCTGTATTTTGTTCTAAGCAGCTTTTCACCCCACACTTGTCACTTTCTGCAGCTAGAACTCTTCTTTTAGGCTCAGCTCACTGACTGTCTTGGGAGGAGGGGCTGGGTGTGGCACACAGTGACCTCCTGTGCACTCTGAAATGACAGCTCCTGCAGAATGGGGACGGGCCTCACACCTAGTTGTTCTCAGAAACTCCAGTCATGCCCAGATTTCCCCACAGCGCACCATAGCTGTCATGTCCCATGCGGAACCTGACCCCGGCACGGTGGATGGGGACTCCGCTCTCACGGAGCCCTCCACGCTCTGTGGTCCAGACCAGATGCAGATGGCCGGCTGCCCTCACCTGCCACCGCCGTGCCAGTCAGAAGCAGTGCCGGGGAGTTCTCACGTTGGAGTTTTTCAGAGGTTGGGGTGATCAGACTTAAGCATGGCTGTGGGATGCTCTCTCTCAAGCACACACTCTTAACCTCCCCTGTGAAAGCTAAGTGCCAGTGGTGTTCCTTGAAGCCATCAGGGGAGCTTGGCCGCTCCCGGTGGCTCCACCTTACTGGCGTGCCGTGTGCGGCCTTCGTAAGTAAGGAGGGGTGTGAGTCTGCATGCAGGTCTGGGGTGTGGCCTGCAGAATGGCCTAATGAGTACAGTCTTCTGGAACCGAACCAAAAGTAACTTTTCATGTGCCAAGCTTCTCAAGACGTTTGGAATCTTTTTCCATGGGGCGTCAGGAGTTATATTTAGAAACTAATACAGTTTCTTTTCTTCTGTCTCCCTCTCTGTCTCTCTCTCTCTCCATCCCTCTCTCCCTCCCTACCCCCGATTTTCCATTCTTTTTAGGAGGCCTATTTTAAAAACAGAGCTGTGAGGTTAGGAGTTCTCTAGCTGTGCTTTTCCATCTCTGAATTTGCAGTAAAATCCATTTCCCAAGTATTTATTGACTGCCTAGTATGTGACTGGTTCTTGGGAGGGTGACATTGGAGTTCCTGTCCTGAAAGACAGGAGACAGGACACGGAGAGCAGTGAAATAGATCATATGCCTTACATCTGGGGTTCCTGTTGTAGAGGGGAAGGCAGCACTCAGCAAAGACAGCATGCTGGGGTTGGGGGTGACAGTGGGAGCCACGTTGTCAAAACGCAGACTTTGGTAGGCACCCCGTCCCTGCCCTGAGCCCACTAGAGTGAGGGAGTAGGTTGCCCCAGGCTTCCAGTCATAGCTCAGGCTGTCAGCGTGAAAGACCATTGGCCGGTTTGGTTGATTTCCTTGCCTGAAGCTGTGCTGTGATTTTCCACAGGCTGCCGGAGCACAGAACACCCTTGAATTGGTTTGGGAGCCAGCGCTCTCTCACTTGCAGTGACCGAGTTGACCCTCCCAACACCAGCAGAGGGGTTGTTCCAGACCTCACCTTGCTGCGGGGAGGCCAGGTTTGGCCTGGGCCGCAGGTTGGCAAAGCAGAGCTTGGTCCAAGGGGCTTTCCAGGCAGATGCCCGGATCCTGAACGGTGACCTTTGACTCTCCCTGCTCTGTTATTTGTGTACGAGCTGGGGCCCACTGGCAGAAACACCACCCAGTGAAGCCCTTCAGAAACCGATGGGTAACCCCAAACCTCATACAGTACCGCATCATTTCATGTTACGCAGATTTCATTGAAAAATTAAAATCTCTTCTGTGCCCAATTAGATGTCAGTAGAGAAAAAGCCATAGGTTAGTCATCACTGTTGTCAGCAGGGAACACAGCTCTGGAATCTGAAGTGGCTGCTCCCGACTTGGCCCCGCGGCCCCACTTTCCACGGCAACAGCGTGTGGTCCCAAACAGAGGCCTCAGTTCGCCTCCCAGCCAGGGCGAGCACAGGCAATGGAGGGGCCGCGCTCCCTTCTGTCTGCGGGAATGGGAGCGGTTCAGCCAGCCTGGCAGCCTGGCCTGTGCTCTGAGAGGAACGGCGTAGTGGGTGGGGGAGCCATTCTCATCCAAGTCTGGCTCCGTGGGCTGCCTCAGCCGACTTCCCAGGCCCGCCCGAGGCCTGTGGGTGGAAGCCCGGTGTCCAGTTACCACTGGTGCCCAGCGCACACGTAGAGCCTGCTCTGTGGGCTTGACCCCTGCCCTCTGACCTGGCCCTGCTGACCCTCCTTCAGGGGCGGGCACTAGAGCAATGCCCTCACTTGTCTGGATGGTTCACAAGCGGAAGGCTTCCTAGCCCTGGGTTGGGGGGTCCTGGCCTAGGAGGGCTGCCAGAGGAAGAGTCTCTGCTGTGTCCCTTGTGGTCTCAGGTGGGCTTCCAATCTGGCTCGGCTAGACTCCAGAGTGTCCCCGGTGCCCTGCAGATGGGTCTCGTCTGTGGCAGGTGTGCTTGTAAGGCCAGGGTCCATGGCTCTCCTGGGAGCTCCTACTCCTCCTAGTTCTCCTTGTCATCACTCACAGGCGGCTGCTGTTCCCGGAAAACCCTGGCTTGCCTCCAGTCTTTAATAAATACAAAGGCTTGCCTGGCCCTTGTGTGACGTTCTTTCCCCCAGAGGGCACTCAGGCATTAAGGGGAACCAACTCCCTAGTTTCCTTAGCCAGCGTTAGTTAGTCCCTGGTGGCATGGGCCTGTTGCACAGGTGCGAAGACAGGGCAGTGGCTGACAGGTTAGGGAGGGGACTGGAATTCCGCCACCCCGCTCTGCGGATTGATAGCTGGATGACCTTGAGCACCCCTCCCTTGGCCTCAGCTTCCTCTTCTGTGAAATGGGGCTGCTCTGTCCTGCCCCGTGAGTATGGTGGGGATCCAGGGATAAGAAGGCACAAGGGTGCATTTTGTCTACCACAAAGCACCCTGGAGTTCACAGTAGGATTTATTGACATTCTCAGTAAACAGCCTGGAGCCCAAAGTGGGCCTCATGGATCCCGTGCTCACTGCCTGTCATGGTGGTTTTGGACGCGGCAGTGGAGGGGCTGGTACAGAAAGTGAAGCATTTATCAGGACACAGATGAGATGAGCGTGTATATTTTCCAGATCCGATCCCCTCATTTGCTTTTCCTATGAAAAGGAATAAAAATGTGAGGATTAGAGGCAAGGAGGTAGAGGGAAGCTGGTGTATACAGGGTGGAGACACTGTCCCAGGGTGTCTGTGCCGCCGGCTCCCTAGTTTAAGTGCTGCTTTCACATGGGTCGTCCAGGGCCAGGTTCCTAGAGCTGAGGGAGCTTCCTGCCTGCCGTTTCCAGGGCCATGGAAGTAAGTTCAAACTGACCAAGGTTTCCAAAGCCTGGCGGGAAGGCCGCACTTGGATGATACCGGGGCCTGGCCTTGGTTGGAGTCGCACACTGGAGCCCACCCGGAAACCTCTGTTCCTGGCACGTTGGACATGCTGACACGGCTCTGCCATCGTCCCCCTTCCAGGCAGGGCAGGCTCGGCAGCCCAGGTCGCTGCCCGGCCTTCACTGCGTCCCTGGGTTCCTTGCAG
Seq C2 exon
GGCGAGCTGGAGCGGCAGCTGCTGCAGGCCAACCCCATCCTGGAGGCCTTCGGGAACGCCAAGACCGTGAAGAATGACAACTCCTCCCGCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100345:ENST00000216181:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.131 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(25.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development