HsaINT0107992 @ hg19
Intron Retention
Gene
ENSG00000100345 | MYH9
Description
myosin, heavy chain 9, non-muscle [Source:HGNC Symbol;Acc:7579]
Coordinates
chr22:36718474-36722706:-
Coord C1 exon
chr22:36722613-36722706
Coord A exon
chr22:36718567-36722612
Coord C2 exon
chr22:36718474-36718566
Length
4046 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CGTCCCTGGGTTCCTTGCAGGGC
3' ss Score
9.65
Exon sequences
Seq C1 exon
TGGTGAATCTGGAGCTGGCAAGACGGAGAACACCAAGAAGGTCATCCAGTATCTGGCGTACGTGGCGTCCTCGCACAAGAGCAAGAAGGACCAG
Seq A exon
GTGAGTGCTGCAGCCCTTGTCCCTGTGGCCGCCTGCTTGGCCTTGGTGGGATGATGGAGGAAGAGCACTTAGTGGTCCCGGCTTCAGCTTTACAAGAGGATGCTTTGGGGAATGAAGCAGAGGCTGGGCCCATTTCCATTGAGGCAGTGGCGTGGCCTGTCCTGGGAGTGGTCCAGCGGTAGCAAGCCCATTCCATCCTTGGCCTCCTAGCCTTCTGAGTTGCTATGGAAACTGGCGAGGTCCTGGAGTTTGCATGGCAGCCCTCTTGGCTTTTGCAGCTCGTTGCTGTGTGTCCTCCCCTTCTGAGGCTGGAAGGCAGATTCCAAGACTTGGTCCTCAAGTTGATGGAGGCTTGAAAGGTCTCAGGCAGACCTGTATTTGATTCCATTTCTTTTCCCTGCTGTTGAAATGCCTCTGGGTGGACAGCCACCCACCCCCACCACCCCAGCGAAGACAGAAAGGGCAATTGGAAAGTCATCTCACCTCCATTTTTTTCCTCTCCCTTTTGATGGATTATGGTTGAACCCAGCAGTGTCCTCGCTAGGTGAGCTGCACGTTTACTGCACGTTCTGCACTGGGAATGCGTGTTCTGCCCATCGTGTGCCCTTGAATTCTGTATTTTGTTCTAAGCAGCTTTTCACCCCACACTTGTCACTTTCTGCAGCTAGAACTCTTCTTTTAGGCTCAGCTCACTGACTGTCTTGGGAGGAGGGGCTGGGTGTGGCACACAGTGACCTCCTGTGCACTCTGAAATGACAGCTCCTGCAGAATGGGGACGGGCCTCACACCTAGTTGTTCTCAGAAACTCCAGTCATGCCCAGATTTCCCCACAGCGCACCATAGCTGTCATGTCCCATGCGGAACCTGACCCCGGCACGGTGGATGGGGACTCCGCTCTCACGGAGCCCTCCACGCTCTGTGGTCCAGACCAGATGCAGATGGCCGGCTGCCCTCACCTGCCACCGCCGTGCCAGTCAGAAGCAGTGCCGGGGAGTTCTCACGTTGGAGTTTTTCAGAGGTTGGGGTGATCAGACTTAAGCATGGCTGTGGGATGCTCTCTCTCAAGCACACACTCTTAACCTCCCCTGTGAAAGCTAAGTGCCAGTGGTGTTCCTTGAAGCCATCAGGGGAGCTTGGCCGCTCCCGGTGGCTCCACCTTACTGGCGTGCCGTGTGCGGCCTTCGTAAGTAAGGAGGGGTGTGAGTCTGCATGCAGGTCTGGGGTGTGGCCTGCAGAATGGCCTAATGAGTACAGTCTTCTGGAACCGAACCAAAAGTAACTTTTCATGTGCCAAGCTTCTCAAGACGTTTGGAATCTTTTTCCATGGGGCGTCAGGAGTTATATTTAGAAACTAATACAGTTTCTTTTCTTCTGTCTCCCTCTCTGTCTCTCTCTCTCTCCATCCCTCTCTCCCTCCCTACCCCCGATTTTCCATTCTTTTTAGGAGGCCTATTTTAAAAACAGAGCTGTGAGGTTAGGAGTTCTCTAGCTGTGCTTTTCCATCTCTGAATTTGCAGTAAAATCCATTTCCCAAGTATTTATTGACTGCCTAGTATGTGACTGGTTCTTGGGAGGGTGACATTGGAGTTCCTGTCCTGAAAGACAGGAGACAGGACACGGAGAGCAGTGAAATAGATCATATGCCTTACATCTGGGGTTCCTGTTGTAGAGGGGAAGGCAGCACTCAGCAAAGACAGCATGCTGGGGTTGGGGGTGACAGTGGGAGCCACGTTGTCAAAACGCAGACTTTGGTAGGCACCCCGTCCCTGCCCTGAGCCCACTAGAGTGAGGGAGTAGGTTGCCCCAGGCTTCCAGTCATAGCTCAGGCTGTCAGCGTGAAAGACCATTGGCCGGTTTGGTTGATTTCCTTGCCTGAAGCTGTGCTGTGATTTTCCACAGGCTGCCGGAGCACAGAACACCCTTGAATTGGTTTGGGAGCCAGCGCTCTCTCACTTGCAGTGACCGAGTTGACCCTCCCAACACCAGCAGAGGGGTTGTTCCAGACCTCACCTTGCTGCGGGGAGGCCAGGTTTGGCCTGGGCCGCAGGTTGGCAAAGCAGAGCTTGGTCCAAGGGGCTTTCCAGGCAGATGCCCGGATCCTGAACGGTGACCTTTGACTCTCCCTGCTCTGTTATTTGTGTACGAGCTGGGGCCCACTGGCAGAAACACCACCCAGTGAAGCCCTTCAGAAACCGATGGGTAACCCCAAACCTCATACAGTACCGCATCATTTCATGTTACGCAGATTTCATTGAAAAATTAAAATCTCTTCTGTGCCCAATTAGATGTCAGTAGAGAAAAAGCCATAGGTTAGTCATCACTGTTGTCAGCAGGGAACACAGCTCTGGAATCTGAAGTGGCTGCTCCCGACTTGGCCCCGCGGCCCCACTTTCCACGGCAACAGCGTGTGGTCCCAAACAGAGGCCTCAGTTCGCCTCCCAGCCAGGGCGAGCACAGGCAATGGAGGGGCCGCGCTCCCTTCTGTCTGCGGGAATGGGAGCGGTTCAGCCAGCCTGGCAGCCTGGCCTGTGCTCTGAGAGGAACGGCGTAGTGGGTGGGGGAGCCATTCTCATCCAAGTCTGGCTCCGTGGGCTGCCTCAGCCGACTTCCCAGGCCCGCCCGAGGCCTGTGGGTGGAAGCCCGGTGTCCAGTTACCACTGGTGCCCAGCGCACACGTAGAGCCTGCTCTGTGGGCTTGACCCCTGCCCTCTGACCTGGCCCTGCTGACCCTCCTTCAGGGGCGGGCACTAGAGCAATGCCCTCACTTGTCTGGATGGTTCACAAGCGGAAGGCTTCCTAGCCCTGGGTTGGGGGGTCCTGGCCTAGGAGGGCTGCCAGAGGAAGAGTCTCTGCTGTGTCCCTTGTGGTCTCAGGTGGGCTTCCAATCTGGCTCGGCTAGACTCCAGAGTGTCCCCGGTGCCCTGCAGATGGGTCTCGTCTGTGGCAGGTGTGCTTGTAAGGCCAGGGTCCATGGCTCTCCTGGGAGCTCCTACTCCTCCTAGTTCTCCTTGTCATCACTCACAGGCGGCTGCTGTTCCCGGAAAACCCTGGCTTGCCTCCAGTCTTTAATAAATACAAAGGCTTGCCTGGCCCTTGTGTGACGTTCTTTCCCCCAGAGGGCACTCAGGCATTAAGGGGAACCAACTCCCTAGTTTCCTTAGCCAGCGTTAGTTAGTCCCTGGTGGCATGGGCCTGTTGCACAGGTGCGAAGACAGGGCAGTGGCTGACAGGTTAGGGAGGGGACTGGAATTCCGCCACCCCGCTCTGCGGATTGATAGCTGGATGACCTTGAGCACCCCTCCCTTGGCCTCAGCTTCCTCTTCTGTGAAATGGGGCTGCTCTGTCCTGCCCCGTGAGTATGGTGGGGATCCAGGGATAAGAAGGCACAAGGGTGCATTTTGTCTACCACAAAGCACCCTGGAGTTCACAGTAGGATTTATTGACATTCTCAGTAAACAGCCTGGAGCCCAAAGTGGGCCTCATGGATCCCGTGCTCACTGCCTGTCATGGTGGTTTTGGACGCGGCAGTGGAGGGGCTGGTACAGAAAGTGAAGCATTTATCAGGACACAGATGAGATGAGCGTGTATATTTTCCAGATCCGATCCCCTCATTTGCTTTTCCTATGAAAAGGAATAAAAATGTGAGGATTAGAGGCAAGGAGGTAGAGGGAAGCTGGTGTATACAGGGTGGAGACACTGTCCCAGGGTGTCTGTGCCGCCGGCTCCCTAGTTTAAGTGCTGCTTTCACATGGGTCGTCCAGGGCCAGGTTCCTAGAGCTGAGGGAGCTTCCTGCCTGCCGTTTCCAGGGCCATGGAAGTAAGTTCAAACTGACCAAGGTTTCCAAAGCCTGGCGGGAAGGCCGCACTTGGATGATACCGGGGCCTGGCCTTGGTTGGAGTCGCACACTGGAGCCCACCCGGAAACCTCTGTTCCTGGCACGTTGGACATGCTGACACGGCTCTGCCATCGTCCCCCTTCCAGGCAGGGCAGGCTCGGCAGCCCAGGTCGCTGCCCGGCCTTCACTGCGTCCCTGGGTTCCTTGCAG
Seq C2 exon
GGCGAGCTGGAGCGGCAGCTGCTGCAGGCCAACCCCATCCTGGAGGCCTTCGGGAACGCCAAGACCGTGAAGAATGACAACTCCTCCCGCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100345-MYH9:NM_002473:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.134 A=NA C2=0.073
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(23.5=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)