DreINT0100010 @ danRer10
Intron Retention
Gene
ENSDARG00000001014 | myh9b
Description
myosin, heavy chain 9b, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030131-998]
Coordinates
chr3:5229113-5229767:-
Coord C1 exon
chr3:5229561-5229767
Coord A exon
chr3:5229218-5229560
Coord C2 exon
chr3:5229113-5229217
Length
343 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAC
5' ss Score
4.29
3' ss Seq
CGTCTGTGTGTTGTGTTCAGGCT
3' ss Score
8.81
Exon sequences
Seq C1 exon
AATAAGGTGTCGGTGGAGAAGAGTAAGCAGGCTCTGGAGTCTGAGAGGAACGAGCTGCAGATCGAGCTGCAGACGCTGATGCAGGGGAAAGGAGAGTCTGAGCACCGCAGGAAGAAGGCGGAGGCGCAGCTGCAGGAGCTGCAGGTCAAACACACCGAGAGCGAACGCCAGCGCATCGAGCTCGCCGAGAGACTCACCAAGATGCAG
Seq A exon
GTGCACACAATCACACTTCACCACACTGATGCCATAGCAACCACTTTACAGCATCCTTTAATCCTCTACAACACCATAGCAACAGCCTAGCAACACCCTAACAACTACAGTGGAGTGTGCTTGAAAATACGGATACACCTGGGCAACACTCATTGTAATGCTCTAGCAACTGTCTAGGATTGACCTCCTAGTCACTTTGTAAACCTTAGCAGCTGCCTAGCAACCACATAGTAAAACCACAGCAACTCCCTGATAGCGGCCTAGTAACCACATTGCAACTGCCTAGCAACACCCTAGCAGCTACAATGCTTTGCTACTGCTAACGTCTGTGTGTTGTGTTCAG
Seq C2 exon
GCTGAGCTGGATAACGTCAACACTCTGCTGAGCGACGCTGAAGGAAAGTCCATCAAAGCGTCCAAGGACTGCTCCACCGTGGAGTCGCAGCTGCAGGACGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001014:ENSDART00000137105:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.957 A=NA C2=0.914
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(10.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(5.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTGTCGGTGGAGAAGAGT
R:
GTCCTGCAGCTGCGACTC
Band lengths:
303-646
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]