DreINT0101055 @ danRer10
Intron Retention
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3178323-3180927:+
Coord C1 exon
chr18:3178323-3178508
Coord A exon
chr18:3178509-3180810
Coord C2 exon
chr18:3180811-3180927
Length
2302 bp
Sequences
Splice sites
5' ss Seq
AGGGTTTGT
5' ss Score
3.38
3' ss Seq
GCCGTTTTGTTTCTTGGCAGTCG
3' ss Score
8.54
Exon sequences
Seq C1 exon
GAGCTTCCTAAATATCTGCGAGGATATCACAAGTGTTCCAGGGAGGAGGTTTTCCAGCTCGGCGCTCTGATCTATCGAGTTAAATTTGAGGACGACAAATCCCACTTTCCCAGCATTCCCAAAATGCTGAAGGAGATGATTCCTCAAGACCTGATTCGCCAGCTCTCACCCGACGACTGGAAAAGG
Seq A exon
GTTTGTGTCAAAGCTTCAGATAAGACTGTCATGTTTTTTAAAATGTTAATAGTTATTGTCCGGTGCATTGCTAGAAATAAAGCTCTACTGAGGCAAAATATGCAGTTGAAGTCAGAATTATTAGCCTCCCTGTTTATTTTTTTCCCTCAATTTCTGTTTAACAGTAAGAAGATTTTACAACACATTTCTAAACATAATAGGTTTAATAACTCATCTCTAATAACTGATTTATTTTATCTTTGCCATGATGACAGTAAAAGATGGACTATTGACTAGATATTTTTTTTCAGACTCTTCTATACAGCTTAAAGTGACATTTAAAAGCTTAACTAGGTTAACTAGGCAGGTTAGGGTAATTAGGTAAGTTATTGTATAACGATGGTTTGTTCTGTAGACAGTAAAAAACATTGCTTGAATAGGCTAGTAATTTTGACCCTAAAATGGTTCATAAAAATTCAAAAACTGCTTTTATTCTAGCCGAAATAAAACAAATAAGACTTTCTCCAGAAGAAAAAATATTATCAGACATACTGTGAAAATTTCCTTCCTCTGTTAGACATCTGTTTATTTTTTCCCCAATTTCTGTTTAACAGAGAGCAGATTTTTTCAACACATTTCTAAACATATTAGTTTAATAACTCATCTCTAATAACTGATTTTTTTTATCTTTGCCATGATGACAGTAAATAATATTTGACTAGATATTCTTCAAGACACTTCTATACAGCTTAAAGTGACATTTAAAGGCTTAACTAGGTTAATTAGTTTAATTAGACAGGTTAGGATAATTAGGCAAGTTATTGTATAATGATGGTTTGTTCTGTAGACTATCGAAAAAAAAAAAGATTTGCCTAAAGGGGCTGATAATTTTGTCCTTAATATGGTGTTTAAAAAATCAAAAACTGCTTTTATTCTAGCCGAAATAAAACAAAAAAGACTTTCTCCAGAAGAAAAACTATTATCAGACACACTGTGAAAATTTCCTTGCTCAGTTAAATTGGATCATTTGGGAAAAATTTTTAAAAAGAGAAAAAAATGTAAAGGGCGGCTAATAATTCTGACTTCAACTGTGTGTGTGTGTATGTATGTGCCCCTCACAAATCTTTTAAATTCATATTTTTAATAGGAAGCTATGCAATATTATATTTGTGCATATACATTAGATTAGTCAGTACTGAAACCAAATCTGGAGCTTATCTAACAAAATAACTTACGATAACAGTCCAAAAACTATTACAGCCAAATTTATATCTTATAGAAAAGTATTCAATGCAATTTTTTGAAAAAAGAGGTAAAATCAAGAGAAACATTTTTTTAAATATTTCGTTGATATTTTGTGGGTTGTAATTCTTTTTGCAATATTTAGCTTGAATTTAATTGTATTATCTTTCAATTTCTAAATATGTTTGATGACTAATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTCACGCAAAGACAACTGCAGTGATATGATCAATGATCATAAGATCATTTATGAAATCTTTTGCATGAATAATAGTTTAATTGGAATAAATTTCTATTGACAATTCTACAGAATACAAAAAAGTATGTTTTATAGAATTATCTGTTGTCTTGGACTTGACACATGGCAGAGAATTAGGTTTATTAAGTCTTACCTCCCTGACTCGTCATCCCTCCTTTTTGCTTCACACACAAAAAAAAAAAATCAGTAGCCATGCTTAGTCACAATAAGAGCATCATCATAGTATTTAAACTTTAATTTTGTCGACTTGCAAAACTTACTGTGTGCCGACATCTCCGCATATAAAGCTGTTACGCCGGTTTCACAACACATGAGACATTAACTAGGTTTCCATCCACCTATTTTTATGTTGATTTTGGATATTCATCAAGATGCTCATACATTTTGAAAATGTTGGGGGAAATGTATTAAATAAAATATGACTAACAGGAAAAATCAATAGAAACATAAAAAAGAGACATTTGGTTGATGTTTAGTGACCATTACTATTGTAATGGAAGGAACTGTTTAATGTGTATAAATGTACCAACAATTTTTGACTATATTCACTGAAAATATTAAGAGATATCATTTTCAAAAGTGGGTGTACTCATTTATGCTGAGCACTGCAAATAATATACATCATTTTCATCCTCCAAACAGCCGGTCCTCTAAATTTTGCCGTTTTGTTTCTTGGCAG
Seq C2 exon
TCGATTGTGGCGTACTTCAACAGGCATGCTGGGAAATCAAGAGAGGAAGCCAAGCTGATGTTTCTGAAGATCATTTTCAAATGGCCCACGTTTGGTTCAGCCTTTTTTGAAGTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871:ENSDART00000166980:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(55.0=100)
A:
NA
C2:
PF0037313=FERM_M=PD(31.5=89.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]