BtaINT0098299 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57410415-57411076:+
Coord C1 exon
chr15:57410415-57410600
Coord A exon
chr15:57410601-57410959
Coord C2 exon
chr15:57410960-57411076
Length
359 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
GACCCACCCTCCCTCTGCAGTCC
3' ss Score
9.71
Exon sequences
Seq C1 exon
GAGTTGCCCAAGTACCTCCGAGGCTACCACAAGTGCACGCGGGAAGAGGTGCTGCAGCTGGGGGCGCTCATCTATAGGGTCAAGTTCGAGGAGGATAAGTCCTACTTCCCCAGTATCCCCAAGCTGCTCCGGGAGCTGGTGCCCCAGGACCTCATCCGGCAGGTCTCGCCTGACGACTGGAAGAGG
Seq A exon
GTGAGCACAGAGGGAGACAGTGGGAACAGGCCCCCCCCCCCCACACTTCCGAATGGGTCTCTGGACACCCCAGGGTCAGGGGGGCAGGTGCTGGACAGTAGCCCAGGGAAGTATCTCTTGTGACCCCTGTAAATTCAGCTGGTCACTTTGCAGCAATTTGTCTGGTCCTGGTTACTAAGGTGGCCCGATTTTCCTTGATACTGTTTGACCTGCTTGCTTTGGGGAGGGAAGGGCTGTCAAGAGTCCACTAACTGGTATTAGTGGGAGACTGCTGGCCCCCCGTGGCCCATGACAGCTGCTGACAGTGCAGGGGGCAGGACTGGCAGGGGAGAGGACTCTGACCCACCCTCCCTCTGCAG
Seq C2 exon
TCCATCGTCGCCTATTTCAACAAGCACGCGGGGAAGTCCAAGGAGGAGGCCAAGCTGGCTTTCCTGAAGCTCATCTTCAAGTGGCCCACCTTCGGCTCAGCCTTCTTTGAGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955:ENSBTAT00000005191:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(55.0=100)
A:
NA
C2:
PF0037313=FERM_M=PD(31.5=89.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTGCCCAAGTACCTCCGA
R:
TTCACCTCAAAGAAGGCTGAGC
Band lengths:
302-661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development