RnoINT0097404 @ rn6
Intron Retention
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163004208-163004911:-
Coord C1 exon
chr1:163004726-163004911
Coord A exon
chr1:163004325-163004725
Coord C2 exon
chr1:163004208-163004324
Length
401 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAAC
5' ss Score
4.58
3' ss Seq
CTGATTCCCCTCCCCCACAGTCT
3' ss Score
9.57
Exon sequences
Seq C1 exon
GAACTGCCCAAGTATCTCCGAGGCTACCACAAGTGCACCCGGGAGGAGGTGCTACAGCTGGGCGCGCTCATCTACAGGGTCAAGTTTGAGGAGGACAAATCCTACTTCCCTAGCATCCCCAAGTTGCTGAGGGAGCTGGTGCCCCAGGACCTAATCCGGCAGGTCTCACCTGATGACTGGAAACGG
Seq A exon
GTAAACATGGAGGCGCAGCGGGAATGGGGCCTCTCAGAACGGTACACTGCACATCCCAGGGATTGAGACACAAGTGCCGGCCAGCAGCTACGCGGAATGGCCCTCCCGTGTGACGAGGGAGCCTCTATTCCATCTCTGTAGGCTTCATTCTCTAGTCCCTGTACAAAGGATTTACTGGCCCTATGGTGTTAATTTACCCCATCCTGGTTGTCATGGTGACCTGAATTTGCTTGCTACCCTCTGGTATGCATGGGTTAGGGTAGATCCAAAACCAATTGGCTGGGATATGTGGGGACCATGGCATAAGTTGGCAACACTGTCTGTTCCATGCCTGGCTCTGATGATGTAGACAGGCAGAAGCAGAGCTGTGATTGGCCCTCCCTGATTCCCCTCCCCCACAG
Seq C2 exon
TCTATTGTCGCCTACTTCAACAAGCATGCAGGGAAGTCCAAGGAGGAGGCCAAGCTGGCCTTCCTCAAGCTCATCTTCAAGTGGCCCACCTTTGGATCAGCCTTCTTTGAGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641:ENSRNOT00000019053:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(55.0=100)
A:
NA
C2:
PF0037313=FERM_M=PD(31.5=89.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGCCCAAGTATCTCCGA
R:
TTCACCTCAAAGAAGGCTGATCC
Band lengths:
302-703
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]