GgaINT0104549 @ galGal4
Intron Retention
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192358987-192359992:-
Coord C1 exon
chr1:192359807-192359992
Coord A exon
chr1:192359104-192359806
Coord C2 exon
chr1:192358987-192359103
Length
703 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAAA
5' ss Score
5.16
3' ss Seq
TACTGTCTTCTCTGTTGCAGTCC
3' ss Score
9.7
Exon sequences
Seq C1 exon
GAGTTACCAAAGTATCTACGTGGTTACCACAAGTGTACACGGGAAGAGGTCCTGCAGCTGGCAGCTCTCATCTATCGAGTGAAATTTGAGGATGACAAGTCCTATTTCCCCAGCATCCCTAAGCTCCTGAAGGAGCTGGTGCCTCAGGACCTGGTCCGGCAGCTCTCTCCAGATGACTGGAAACGG
Seq A exon
GTAAAACAGCAGCTTTATTCATATGTCAGTCTAGACTTGGGGAAGCCCACCATCTTGTGTCACTTGTCTGATGTTCAGCGTTGATGCAGTGTTGCCAGAATGAGTGACCTGTGGTCCTTCTTGAGCCTTAGCAAAGTATGGCTCCCCATCAGCACCAAGAGGAGGAATTGTACGTGTGTTTTTGGATGGGCAAGTCTAGAACATAGAAGAATATAGATGTCTCACTGCCAAGAAACAGTCTTAGAAGTATTTTCTCTTTCCTAGGATTTGAACTCAACCATGTACCTAACCAACAATTTATTGGTTTCCTCAGTAGAAAGTCCCTACAATAGAGTTACCAGCATGGCTCATCAAAGAAAGGAGGACCTACCTTGCTTCCAGGTTTTGCTCCAGTGACCATCCAGTGGAAGCATTCATTGGTGCAGAGACTGGAATCAACACCTACATAACTTCTTTAGCTATCTTCTTGGTGGCTGTCCCAAAACTTGCCAAAGAACACTCTGTAGGCTAGAATTTAGTGCAGAGAGAACTGTTTGTAGGTTTACCATACACTGTGGTTTGTAAATGAATCTCAATGAAAACCAAATTACTATGTGAAGCAGTTATGGCTTCTGGTAGGATAGTCCATCTTTGTGATATGATGTTCCTTCCCTGGAGAACAGACAGTGCAAACCCACCAGCTCTACTGTCTTCTCTGTTGCAG
Seq C2 exon
TCCATTGTGGCATACTACAATAAGCATGCAGGCAAAACAAGAGAAGAAGCCAAGCTTGCCTTCCTAAAGATTATCTTCAAGTGGCCTACATTTGGATCAGCATTCTTTGAAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733:ENSGALT00000001046:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(54.0=100)
A:
NA
C2:
PF0037313=FERM_M=PD(31.0=89.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTACCAAAGTATCTACGTGGT
R:
TTCACTTCAAAGAATGCTGATCCA
Band lengths:
302-1005
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]