GgaINT0104549 @ galGal3
Intron Retention
Gene
ENSGALG00000000733 | MYO7A
Description
NA
Coordinates
chr1:198107480-198108485:-
Coord C1 exon
chr1:198108300-198108485
Coord A exon
chr1:198107597-198108299
Coord C2 exon
chr1:198107480-198107596
Length
703 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAAA
5' ss Score
5.16
3' ss Seq
TACTGTCTTCTCTGTTGCAGTCC
3' ss Score
9.7
Exon sequences
Seq C1 exon
GAGTTACCAAAGTATCTACGTGGTTACCACAAGTGTACACGGGAAGAGGTCCTGCAGCTGGCAGCTCTCATCTATCGAGTGAAATTTGAGGATGACAAGTCCTATTTCCCCAGCATCCCTAAGCTCCTGAAGGAGCTGGTGCCTCAGGACCTGGTCCGGCAGCTCTCTCCAGATGACTGGAAACGG
Seq A exon
GTAAAACAGCAGCTTTATTCATATGTCAGTCTAGACTTGGGGAAGCCCACCATCTTGTGTCACTTGTCTGATGTTCAGCGTTGATGCAGTGTTGCCAGAATGAGTGACCTGTGGTCCTTCTTGAGCCTTAGCAAAGTATGGCTCCCCATCAGCACCAAGAGGAGGAATTGTACGTGTGTTTTTGGATGGGCAAGTCTAGAACATAGAAGAATATAGATGTCTCACTGCCAAGAAACAGTCTTAGAAGTATTTTCTCTTTCCTAGGATTTGAACTCAACCATGTACCTAACCAACAATTTATTGGTTTCCTCAGTAGAAAGTCCCTACAATAGAGTTACCAGCATGGCTCATCAAAGAAAGGAGGACCTACCTTGCTTCCAGGTTTTGCTCCAGTGACCATCCAGTGGAAGCATTCATTGGTGCAGAGACTGGAATCAACACCTACATAACTTCTTTAGCTATCTTCTTGGTGGCTGTCCCAAAACTTGCCAAAGAACACTCTGTAGGCTAGAATTTAGTGCAGAGAGAACTGTTTGTAGGTTTACCATACACTGTGGTTTGTAAATGAATCTCAATGAAAACCAAATTACTATGTGAAGCAGTTATGGCTTCTGGTAGGATAGTCCATCTTTGTGATATGATGTTCCTTCCCTGGAGAACAGACAGTGCAAACCCACCAGCTCTACTGTCTTCTCTGTTGCAG
Seq C2 exon
TCCATTGTGGCATACTACAATAAGCATGCAGGCAAAACAAGAGAAGAAGCCAAGCTTGCCTTCCTAAAGATTATCTTCAAGTGGCCTACATTTGGATCAGCATTCTTTGAAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733:ENSGALT00000001046:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(54.0=100)
A:
NA
C2:
PF0037313=FERM_M=PD(31.0=89.7),PF0064018=PID=PU(4.5=7.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTACCAAAGTATCTACGTGGT
R:
TTCACTTCAAAGAATGCTGATCCA
Band lengths:
302-1005
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]