MmuINT0104579 @ mm10
Intron Retention
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:98053806-98054528:-
Coord C1 exon
chr7:98054343-98054528
Coord A exon
chr7:98053923-98054342
Coord C2 exon
chr7:98053806-98053922
Length
420 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAAC
5' ss Score
4.58
3' ss Seq
CTGATTCCCTTCCCCCACAGTCT
3' ss Score
10.17
Exon sequences
Seq C1 exon
GAACTGCCCAAATATCTCCGAGGCTACCACAAGTGCACCCGGGAGGAGGTGCTGCAGCTGGGCGCACTCATCTACAGGGTCAAGTTTGAGGAGGACAAATCCTACTTCCCTAGCATCCCCAAGTTGCTGAGGGAGCTGGTACCCCAGGACCTAATCCGGCAGGTCTCACCTGATGACTGGAAACGG
Seq A exon
GTAAACATGGAAACCCAGAGGAGGAGCAGCAGGAGTGGGGCCTGAGAATGGTACCTTGGGTACCCCAGGGGTTGAGACAGCAAGTGCTGGCCGGCAGCTAAGGGGAATGGCCCTCCCTCCTGTGTGATAAGGGAAGCCTCTATTCCATCTCTGTCTGCTTCATTCTCTAGTCCCTGTGCAAAGGATTTAGTGACCCTATGGTATTAATTTGCCCCATCCTAGTTGTCAAGGTGACCTGAATTTGCTTGATGTGCCCTGGTCTGTCTGCATGGGTTGGGGTGGATCAGAAACCAGTTGGCTGGAGTACGTGGGGACCATGGCATAAGTTGACAACACTGTCTGTACCATGCCTGGCTCTGATGGTGTAGACAGGCAGAAGCAGAGCTGTGATTGGTCCTCCCTGATTCCCTTCCCCCACAG
Seq C2 exon
TCTATTGTCGCCTACTTCAACAAACATGCGGGGAAGTCCAAGGAGGAAGCCAAGCTGGCCTTCCTCAAACTCATCTTCAAGTGGCCCACCTTTGGCTCAGCCTTCTTTGAGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761:ENSMUST00000107128:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(55.0=100)
A:
NA
C2:
PF0037313=FERM_M=PD(31.5=89.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGCCCAAATATCTCCGAGG
R:
TTCACCTCAAAGAAGGCTGAGC
Band lengths:
302-722
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types