DreINT0101100 @ danRer10
Intron Retention
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22269777-22270163:+
Coord C1 exon
chr21:22269777-22269962
Coord A exon
chr21:22269963-22270046
Coord C2 exon
chr21:22270047-22270163
Length
84 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
TTGTCTTCTCTCTTCTGCAGTCT
3' ss Score
10.73
Exon sequences
Seq C1 exon
GAGCTTCCAAAGTATTTGCGGGGCTATCACAAGTGCTCTGTTGAGGAGGCCTTTCAGCTTGCTGCGCTCATATACAGAGTCCGGTTCGAGGAGGACAAATCCCACTTCGTGCACTTCAGCAAGATGCAGAAAGAGCTGCTTCCTCAAGACCTCATTCATCAACTCTCACCCGACGACTGGAAACGG
Seq A exon
GTGAGCAAAACAACAGCCGGCCTCATTCAGTCGTTTATCACTAGAGGATAATGCAGTCATGTGTTTGTCTTCTCTCTTCTGCAG
Seq C2 exon
TCTGTCGTCACACACTTTAACAAGCATGCTGGGAAATCTCGAGAGGAAGCAAAACTCATGTTTCTGGAAATCATTTACAAGTGGCCTACTTTTGGATCTGCCTTTTTTGAAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632:ENSDART00000148019:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(55.5=100)
A:
NA
C2:
PF0037313=FERM_M=PD(31.8=89.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTCATATACAGAGTCCGG
R:
TCCTCTCGAGATTTCCCAGCA
Band lengths:
170-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]