HsaINT1024314 @ hg38
Intron Retention
Gene
ENSG00000137474 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr11:77211152-77211937:+
Coord C1 exon
chr11:77211152-77211337
Coord A exon
chr11:77211338-77211820
Coord C2 exon
chr11:77211821-77211937
Length
483 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
TGACCGCCCTGTCCCCATAGTCC
3' ss Score
10.48
Exon sequences
Seq C1 exon
GAGTTGCCCAAGTATCTCCGAGGCTACCACAAGTGCACGCGGGAGGAGGTGCTGCAGCTGGGGGCGCTGATCTACAGGGTCAAGTTCGAGGAGGACAAGTCCTACTTCCCCAGCATCCCCAAGCTGCTGCGGGAGCTGGTGCCCCAGGACCTTATCCGGCAGGTCTCACCTGATGACTGGAAGCGG
Seq A exon
GTGAGCATGGGGTGGGCATCGGGAATGGTGGGGCCCTGAATGGGCCTCGGGGCACCCCAGGGGCCAAGGGGGCAGACACTGGCCAGCAGCCCAGGGAGGTGCATCTTGTGGTTCTTGTACTTGATGAGGCCGCCCACCCTTGTTCCTCCACCTGCCTTATCCTTCAGTCCTCCATGCCAAGGACTCAGTGGCCACTTGGCAGTCATTTATCCTGTCCTGGTTACCATGGTGACCTGTTTGTCCTTGATACCCTTTGGTCTGCCTGCCTGGGGGTGAGAAGGGAGGTCGGGAGTCCATTAGCTGAAATATGGGGAGAGCCCTTCACAGTCCCCAGGTCTGCTGTCCTAGTCCTGGCCCTGAGGGTGCAGACGGGGCTGGAGTGGGCAGGGGTGGTGTGGGGAGGACTCTGAGCTCTGAGCTGGCCTGCCCTGAGCAGGCCTGTCCCCAGGACTGAGCCCAGCCCTGACCGCCCTGTCCCCATAG
Seq C2 exon
TCCATCGTCGCCTACTTCAACAAGCACGCAGGGAAGTCCAAGGAGGAGGCCAAGCTGGCCTTCCTGAAGCTCATCTTCAAGTGGCCCACCTTTGGCTCAGCCTTCTTCGAGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137474:ENST00000409709:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(55.0=100)
A:
NA
C2:
PF0037313=FERM_M=PD(31.5=89.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTTGCCCAAGTATCTCCGA
R:
TTCACCTCGAAGAAGGCTGAG
Band lengths:
302-785
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains