DreINT0106235 @ danRer10
Intron Retention
Gene
ENSDARG00000009341 | nrap
Description
nebulin-related anchoring protein [Source:ZFIN;Acc:ZDB-GENE-060616-224]
Coordinates
chr12:30496659-30499611:+
Coord C1 exon
chr12:30496659-30496766
Coord A exon
chr12:30496767-30499299
Coord C2 exon
chr12:30499300-30499611
Length
2533 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
TTCTTTTTTTTCCCCCTCAGTTC
3' ss Score
10.72
Exon sequences
Seq C1 exon
AAAGTGTATAAAACATCAGGTGAGCAGGTGAAGTCTGCAGGTTATGACCTCAGGTTAGATGCCATTCCCTTCCAGACAGCCAAGGCCTCCAGAGAAATTGCAAGTGAT
Seq A exon
GTAAGTCAAAATCAAAACGTTTATCCAACAAACTGCATACCAAACCAATTTCATACTTTTAATTAAAAAGCTGGAGAGCGTGAAATTACCTCTCCTTAGCTTAAGCTTGTAATCATGCTTTTTAATTTTCGTGAGACATGCCATTCTCCATCTTTTTTATCATTCTTATATCTGTATACATAAAAAGGGCTCCTGGCCAGGATTCTGCAAATGGTGGTGGATCATTAGCATTTTCTTTTAGCAGCAAGAAGAACTAAACTTGTACACTTATTCAATATGATGTTTAAATTGTATAACAATTAGAGATTAAACTGTAGAGAAACTCACTACGGGTAATGCTAATACAGACTACATGTATACACAGTTATGCAATGCTGATGCTAACAATTTGGGAAGAATATCAATAATAATAATAATTTGTACAGTTGAATGTAATATGAGCAATCAGTCGTTAGATTTAATCACATCGGTAATAAAATATATTGTAATTTTTGTCTTCAGCTAGTCAGAAATGTTGCAGACTTGTTGCTTGCATGTTCAGATTTTCCTTTACTAGTGAAAATTATTATTTGGATCAAACTTCCAGAAACTGTTTTGGAAGTACAGTTTCCACAAACTCCTTAAAACATCAGATTAATCCATGCCAATGCAAAAGCCTTCCAACTAGATGATTATTCTGAAAACAACTGCAATTACAGGTTTCAAACAGAGATGGCGACAAAGAGGTTAAACTTACTTCGTTTTTGCCAGAATGCAGTTTCATTATACAACAAAATCACTTTTCATTACTTAACAAGAAGGATTAGATTACATGAGAAAAGAAGAAGAAGAAGAAAAAAACAGAGGATAGGGTACATAATTATCAAATTACATATAAACATATTATACACATTTTTCTAATTTTTAACAAGGGATATTAAATGTACTTTACTACAGGAAACGCATATATACAAACATTTTAATGCAAAAATGTTAAAGGAGTAGCATTTATTAACTGTTTTAATAAAAAAAACGGTTTTTGCTTTTCTGTGTTTAGACTTAGATATCACTTTTATATGCATTTGAATTACTTTTTTCTAGCACCATGAAGAGAGGTTTGCTTTTGGCATACTTGGATTTATGCATGTGAAATTTATATAGTAATAAAATAAAGTTTATAACAAAACCAGCATCTTTTAAAGAGCGATCCTTAACATAATGACCCAAAATCACATGTTTATGAGATAAGGAAAATTATTTTTAAATATTATGAGCAAAAAGGCTTCAACATTAATCCAAAAAAGTTAAGTATATTGTCATGCCCAAAATAAATATGAAATAGTTTCATTAAAGCTTTCACAAAAACAGCATTCTAACTCAATATCAATTTTACATTTTTGTGGAATTTTATTTATTTATTTTGTGGGAAAACTCTGTGAATTAATTTAAATGATATTTCTTTAGCCTTATTTGTAATAAAAGAAGTTAAGGTGAAGACCAGACTTGAGTCCAGTTTACACTATTAAAGATATAGTTCCAGTAAAAAAAAACAAAAAACAAAAAAACAAAGAACGGTTTAGACCAGGGATGTCAAACTCAATTCCTGGAGGGCCTAAGCCCTGCACAGTTTAGTTCCAACCCTGCTCCAACACACTTACCTGTAGGTTTCAAAAAAGCCTGAAGGACTCAATTAGTTTGATCAGGTGTGTTTAATTAGGGTTGAAACTAAACTGTGCAGAGCTGCGGCCCTTTTGGAACTGAGTTTGACACCTGTGGTATAGACATATTTTCTTTTAAGATTAAAGATCTAATTTTGTGAATGTGGTGAGGGGGCGTGGCCGAGAGCCGTGGGAACGGAGTGAGGCCACCGCATAAGTGGATACACCTGCGGTGCGCACCTGCCTCGAATCCCACGGAATGAGCTCTGGACTATAAAAGGAGGAACGATGGCAGAGGAAGCCGAGAGAGGACCGGGCCCAGACAAATTTTACCTTTGCTTTCAGTTTGACGGCAGTCTCCGTGAGGAGCTGCCATCCGTTTGTTTTGGTTTAGACGGCAGTCTCCGTGAGGAGCTACCGTTCATGTTATAAGTAAATATTTTAAAACTGCGTCGGTTCTCCGCCTCCTTCTTCCCGGCGGCCAAAGGGCCGTGAACTTCATTACAGTGATTATTAGGCTTAAATCCAGAGAAACAGATAAAACCAACTGAGGTCTATTCAGGTCAAGGTGGACAATCAGAAAGCGCTGATGTACATACACTGCTTTTGTACAGCATATGTATACCAGCAGGTATTGCCCCCGTTAGTATCATATATTTCTGTTTTTAAATAGGAATTTTGAATCTTGTAATAAATTCAAGGCTAAACTTACAGCCTACAGCTATTTTTCCAAACAGTGTTGATATTTGACAGCACAACAAACATACAGTACATAACCCAATAAGACCTTGTCACTTTTTTATATCTCCACTAGTTACTAAATGTGGCCTTACTACTGACTGGCCAAAAGTGTGTTTTGGGACTTAACATTTGTTGTTCTTTTTTTTCCCCCTCAG
Seq C2 exon
TTCCGCTATAAGGAGGCATTTGTCAAAGACAAGGGCCATCAGGTGGGCCTCCTCAGTGTTGAGGACGACCCCAAGATGAGACACTCGCTGGCTGTAGGGAAGCTCCAGAGCAACAATGAGTACAAGAAGCAGTTCAAGGAGACGCGCTCTCAGTTTAAGATCAATGCTGACCTGCCTGAGTTCCAGCACGCTAAGAAGAGCCAAGCTCAGCTAAGCAACATCAACTACCGCCAGCAACTTCATGACTACACCTGCGATCCTAACCAGCTCAATGTCAAACATGCTAAACAAGCCTACCAGCTGCAGAGCGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009341:ENSDART00000124920:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.192
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=27.9),PF0088013=Nebulin=WD(100=25.0),PF0088013=Nebulin=PU(53.6=14.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]