HsaINT0115724 @ hg19
Intron Retention
Gene
ENSG00000197893 | NRAP
Description
nebulin-related anchoring protein [Source:HGNC Symbol;Acc:7988]
Coordinates
chr10:115350337-115352060:-
Coord C1 exon
chr10:115351953-115352060
Coord A exon
chr10:115350649-115351952
Coord C2 exon
chr10:115350337-115350648
Length
1304 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGA
5' ss Score
5.46
3' ss Seq
TCTGCTCCTCTGACTTGCAGTTC
3' ss Score
8.73
Exon sequences
Seq C1 exon
AAAGTCTACAGAAACTCCTGGGAGCAGACCCGGGCTGGCAGTTATGACTTCAGGCTGGATGCCATCCCCTTCCAGACTGCCCGGGCATCTAGGGAGATCGCCAGTGAT
Seq A exon
GTAAGACCCCCATGTTCTCTCCTGCGGTCACTGATGAGTTTTTCTCTGGTTTTCCCAGTTCTGTTGAAAGGCAAACCACCAGGACCTGTCAAGATTATCTCTCTCTCTGCACCAAAACTGAACATGTACTGTATTTTAAATGAAAGAAAAAAAAAAGGGCTTTACTTTCTAGCATCTTAGGCAGAAATTGTGGTCAAGGAGGGCTGTATTTCCATTCTCTTTTTAGAGAGGCACTCTTAAAAGATGATGGATGAGTACCAAGAGGTTCATGAATATGAGCTTGGGTTGTTGATTTGCAATAAAAGGACTTCTTTTAGCTGAAGTTCAGTGTGGTAGAGTAGAAAGAGATAGGGCTTTTGCCCTAGATGGACAAGTTCAAATCCTGGCTCAGTCACTTAGGAAATTTGGCTGTTTGTCTTGGGCAAGTTGCTCAAATTCTCTGAACTTGATTTTCTACATCTATGAAATAGGGATCTTATCTCCCAGATTAATGTAGGAATGAAAACAAAATCGTATATGGTGTCAGGAACATAGCAGGTATTCTGCAAGAGAGGGCACCATTGACTAGACAAGTGTCCACAGTGCTAGACGGAGGCGCACCTGGGAACAGTTTCCTGCTGGTCCACAATTGGATAAGTACAGAAATTAAGAGCATGGGATTTTTGAAATATTTTTTAGCAATTAGACGTTGTAACATCCAAGCATGTGATCACTGGACTCATCTCATTGAAAAGGGTGAAGGCCAGGTTGGGTGTTACCAAATACAAGTGGTACTGCTACATACTAGCCACATGCAATAGGACCATACATGGGTCTTTGATGCATTGGAAATGTAAAAAGCAAATCAAAATGGGACTGGCCCTTCACTGTAGATGGTTTGAGGAGCACTGGACTAGGTCCCTAAAAGCTGGAAAGAATCAAAGGCAGAGTGGCCTATGTGAGAATGGGCACATTTATCTTCCTGTTGGAGTATTAATTACAATAGTGACAATACCAGTAGCCACCACTCAGTGGGCCAGAGCTGATGCCAGACATGAAGCTCAGTCCTTATCTGGTTGAATCCTCGCAACCTCCTATGGGGTGTAGATCATTCTCCAATTTTATCAGATGGGGAAACTGAGGCTCATGGAGAAACTCAGTAACAGGCCCATGACCACACAGATAGGTCTATTTGAATCCAAAGCCTGTGCCTCTAACCCACTCTTGAGCCTCCTGCTGAGAATGCCCTGGGATGGCCCCATATGTGAGGCTGGTCCTGGGGGAGGTAGGCACCCATGATCTGCCTCTGCTCCTCTGACTTGCAG
Seq C2 exon
TTCCGGTACAAAGAGGCTTTCCTGCGGGACCGAGGCCTGCAGATCGGGTACCGCAGTGTCGACGATGACCCAAGGATGAAGCATTTCCTCAACGTTGGCAGGCTCCAGAGTGACAATGAGTACAAGAAGGACTTTGCCAAGAGTCGGTCCCAGTTTCACAGCAGCACAGACCAGCCCGGCCTCCTTCAGGCCAAGAGGAGCCAGCAGCTGGCCAGTGATGTGCACTACAGGCAGCCCCTGCCCCAGCCCACCTGCGACCCGGAGCAGCTGGGCCTCAGGCATGCTCAGAAGGCCCACCAGCTGCAGAGTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197893-NRAP:NM_198060:39
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.656
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=27.9),PF0088013=Nebulin=WD(100=21.2),PF0088013=Nebulin=PU(53.6=14.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCCATCCCCTTCCAGACT
R:
GCCTTCTGAGCATGCCTGAG
Band lengths:
344-1648
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)