GgaINT0041856 @ galGal3
Intron Retention
Gene
ENSGALG00000008914 | NRAP
Description
NA
Coordinates
chr6:28915877-28916936:-
Coord C1 exon
chr6:28916829-28916936
Coord A exon
chr6:28916189-28916828
Coord C2 exon
chr6:28915877-28916188
Length
640 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGA
5' ss Score
5.46
3' ss Seq
CTTTTCTGCATGTTCCTCAGTAC
3' ss Score
6.8
Exon sequences
Seq C1 exon
AAAGTGTATAAAACATCTTGGGAACAGACAAGAGCATCTGGCTATGATTTTAGGATTGACGCCATTCCATTCCAGACAGCAAAGGCTTCAAGAGAGATTGCTAGTGAT
Seq A exon
GTAAGAATTGCTCTTTTTCAAACACTTCCCACTCCTACTCCCATGACACTCCCCCTCTGCAAAAATGGGTGAATAAGACATTAGAAACCCCCTTTTTTGTGTGTGTGTGAAAATTGGTAACCAATGAAATGAATGCCGTTTAAATATAAAGATTTCCAACTATAGGCTCTCATTAATAATGTCCAATACCAAGCTGCTGTTTCATTTTAAGGAGCTGTTCTTGGGAAGGAGGGATATTATAGTGTAGTTACATAAACTAGGTACCAGGCTATGAATAGTCAAGCGTGGGCTAGAATAAAGTGGGTCGCCTTTGAACACAGAAGACCTCAATGAGAAAGAAAACTGAATATAGAAGAGCTGCATGCTTGGGATGTTTACTTGGTACAGAATAAGACTTCTGGTTACTTTTGAGAGAGAACTACTTTGGGCCCCTATTTGTTCCCCTCCCTTAAAAATTAAGATCAAGGTCATTCTCCTGTAGTGTCAGATTAGGAGATGTATTTTGACATCAAACAAAGCTGTGGTCTCCGTGCAATACAGAAAAACATTATTGAAAGCTAGGGGAGAATATATTGTTTCATAATGGAATTTGAAAGTAATCTGAATGTAAAAATTGCACTCTTTTCTGCATGTTCCTCAG
Seq C2 exon
TACAAATACAGAGAAGCCTTCCTTCGAGACAGAGGCCAGAGGATTGGATTCTTCAGTGCAAATGATGATGCCCACACCAGACATGTCCTCAGAGTAGGGAAACTCCAGAGCGACAACCTGTACAGGAGCGGATACGCCCAAAACAGAGGACATTTTCAGAGTCACCTTAACCAGCCTGGGTTCCTCCATGCTAAGAGAAGCCAGCAGCTTGCCAGCAATGTTAACTACAAGCAGCCCTTGCACCAATACACTTGTGATCCTGAGCAGCTAAATGTGAAACATGCAAAGCAGGCCTATAAGCTGCAAAGCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008914:ENSGALT00000014498:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.106
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=10.6),PF0088013=Nebulin=WD(100=27.9),PF0088013=Nebulin=WD(100=20.2),PF0088013=Nebulin=PU(55.2=15.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATTCCATTCCAGACAGCA
R:
CGCTTTGCAGCTTATAGGCCT
Band lengths:
358-998
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]