DreINT0108366 @ danRer10
Intron Retention
Gene
ENSDARG00000102825 | olfm2b
Description
olfactomedin 2b [Source:ZFIN;Acc:ZDB-GENE-040426-2402]
Coordinates
chr1:58541228-58545048:-
Coord C1 exon
chr1:58544787-58545048
Coord A exon
chr1:58541369-58544786
Coord C2 exon
chr1:58541228-58541368
Length
3418 bp
Sequences
Splice sites
5' ss Seq
AGCGTACGT
5' ss Score
7.8
3' ss Seq
GTGTGTGTGTGTGGGTGCAGGTG
3' ss Score
8.61
Exon sequences
Seq C1 exon
GGACTCTGTGTGTGTGTGAACTCCTCCATCTCTCCATCAGGGTGTGTGTGTGTGTGTGTTTGGACTATCCTCCTCCATCTCTCCGTCAGATCAGCGTGTGTGTGTGTGTGTGTGTGTGGTGATGAGTGCTGCTCTGCTGAAGCTCGGGGCGGTGTTGAGCACTATGGTCCTCATCAGTAACTGGATGTCCCAGAATCTGCCGGCGCTGGTGGGACTGGACCAACACACCGCTGCACCCGGCACCTCCGAGAAGATCATCAGC
Seq A exon
GTACGTACACACAACTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTACGTACTAAACTGTCTTTTTAGATCATGTGTGTGTATGTGTGCCGTATGCTTTTAAAGTGTGTGTGTGTGTGTGTGTTGTGCTGTCTTGTAGAGCGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTTGTGCTGTCTTGTAGAGCGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTTGTGCTGTCTTGTAGAGCGTGTTTGTGTGTGTGTGTGTGTGTGTGTGCATATGCGTGTGTGTGTGTGTGTGTGTACTAAACTGTCTTGTAGAGCGTGTGTGTGTGTGTGTTGTACTGTCTTGTTGAGCATGTGTGTGTGTGTGTGAGTGTGTGTGTGCGCGCGCGCGTGTGTGTGTGTACTAAACTGTCTTGTAGAGGATGTGTGTGTGTGTGCATGTGCGTGTGTGTGTACTAAACTGTCTTGTAGAGCGTGTGTGTGTGTGTGTGTGTGTGTTGTACTGTCTTGTAGAGCATGTGCGTGTGTGTGTGTGTGTGTGTGTACTAAACTGTCTTGTAGAGCGTGTGTGTGTGTGTGTGTGTGTGTTGTGTTTGTTGTACTGTCTTGTAGAGCATGTGTGCGTGTGTGTGTGCGTGTGTGCGTGTGTGTGTGTGTGTGTACTAAACTGTCTTGTAGAGCGTGTGTGTGTGTGTGTGTTGTACTGTCTTGTAGAGCGTGTGTGTGTGTGTGGTGTGTGTGTGTGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAATGATGAAGTGTAATTTTGAACCGTGAACAGGAAAACACAGGGACTCACACAAACACTCCCACACACACTCAGTGTGGCGCTTCCTCTGAGAACTGGAGATCTGCCACTCACGCCTGGCCACATCCTGGCATCGCCACGGCGACCTCACGGTGCCAGCCAGCCTATCAGAATCAACAGAAAACACAGACTCAGCACCAGTCAGCCAATCAGAGCAGGCTAATTCAACTGCACTCATGCAAATAGAGATGCAGGACAACCTCAGATTACCTTCTGGCCAATCAGAACACACACACACACACACTCAGCATCAATCAGCCAATCAGTGACCCTCGGGAATGTCGCAGCACCAGCCAGCCAATCACAGGCAGCACAATGGTGTTTATTTTTAAATGCGACTTCCTTGATGGTGTAGGTGAGACAGGTTTCCCATAACACTCTCGCTGCTGTCATTGGTCAGTCAGTCAGTTAGCTCCGCCCCATACTCAGCGGATTGGTCAGAACTAACTGCTAAAACATAATATGTGTGTGTGCTGTCCTGGTACTCATATCACATTGTGGTGACTAAATGTCCCCACAAGTATAGCAATACCAGTAAGTATTGGCCTTGTGCATTCGGTTTTGTTGGTCTCCGCCAGGAAAATCCGGCAGGATGAAGGACAGTGAGGATGTGAAGTGCAGAGTGTTCGCTGTGAGGGCCAGGAGAGAATATAGAGTCTGTACAGCACAAACATCACTGCAGAAATGAGGAGAGACCATAAACACTGAGCAAAAGTGTGTGTGTGAGTGAGTGTGTGTGTGTCAGCGGGATGCCAGTTGTCTCTGTGTGGTGTGTGTTTGTGTTTCATACGCTGCTGTGACGCACACATGGAGACTCACAGTAACCGGATCAGAACAGATGGAAAGGGCTCATCTAATTAAAGAGCCCAGCAGAGAGCGTGCGTGTGTGTGTGTGTGTGTATGTGTGTGTTTGTGTGTGTTTGTGTGTGTGTGTGTGTCTGTGTGTGTCTGTGTGTGGTTTTCTAGTTTAGTGGTGTTTTCCTGGTTTCATCTGCTGGAAAGTGTCCAGAATGCCTGTTAATTTTGCCATATTGAAGGGAAATAAATTAGACTGTTAATTATTTCCTATTTCAGTGGGAATGAGGAATAGATCAACACCTGAAACCTGACAGCAGATCACCTGAGACTGGAAGATGCTTGTGGAAGTTGGTCTGCAGTATGGGCAGATGTGACCGGGCACCAGACAACACAACAGAACTGAACTCTACAGGGCCGCCGGCTCTCTAAAGCTGCACAGCTTGGCTGGGGTTTGCGGCAGCTTAGTACCGTATAAAGTGGCGGGATATCACGTTAACAGCAGCAACCTATCTGAATCCACGAGTCCACCATTTTAATTGGGTTCTGGAAAACGGCATGAGTCCAATTACCCTCGGTTCCGACCACATTAGTTCCCAAACAAAACGAATGCGGAGGGTGATTATTGCTATGGCGGGTTTCCAGTTTGTAATGTAGGATGAGTGCAAATGTGAAGACCATGGATGTTCAACTTCTGTTGAGCTTATTCTGCAATGTGGACCTGCGCTCGTGTTCTCCATTGTTTAGAACAGGGGTGTCCAATCGTGCTCCTGGAGATCTACCTTCCTACAGAGTTCAGCTGCAACCTTGATCAAATGCACCTGTCTTTATTTGCCAAGTGCTCCTTCATATCCTGCTTAGTTAGTTTAGTTGTTTTTGATAAGGGTTGGAGCTAAACTCTGCAGGAAGGTTGATCAAGAGTAATAAATGGCAGAAGACAGTCAAACTACCTGCTCTACAGACACACATGTGTGCGTGACTATACACAAAACTAGAATAACAGAATCAGTGTGCGACATCGAGAAGCTGAACAGGCTGTTTGTAGCGTCCTGAAATCAATAGAAGTGAATTGGAGCGGACGTCTGGAGCCAGAAAGATTCCAATGGCGGCGCCTGACTACACAAATGGCCTTTAGTTGGTTTATTTAATTGGAATACATGTAAACATGTTGTATGTTCAGAGTGTGGACAGCAGGGCAGGGACTGTAAAAACTCAGTGTTGTTGGCCTGAGTGAGTTCTGACGCTCTCGACACAGCAGGTCGACGGTGGGCCATTGGGCTTCATCAGTCAGTGTGTGCCACTGGTGTGTCTGGTGTTGTCCACACTTCACCACTTGTCAGGTAAAAGTTGGAGCTGAAAAAAAATCTTCTCTGGAGTCCGTCGGCTGCCCTGGTTTGGAGTGTTCACTCACAGTTTTTGGTCCAGACAGGACCAGACACAAGCCAATGCAAGGCGACAACACAATTGGTTTTGATTGTCACTAGTTGTTTAGCGTCGCCTTGATGTGTTTGGAGCTCTACAGGGGAATGAAAACCGTTTAGTCATGTGAACCAACAGTAAAGCAGTAGGGTCATCACAAACCCAATGATGCTGATAGTGACTATTCTCTCTGACCGATCAGTGATCAACAGCGTCTGTACCTCACTCTTTAGCAGTTTAACAAGTACCAGGTCTGTGTGTGTGTGTGTGTGTGGGTGGGTGTGTGTGTGTGGGTGCAG
Seq C2 exon
GTGTTGTACCCCGGGCAGGATGAGGGCTGGCAGGTGTACGGCTCTGCTCAGGGCCGATGTGTTTGCTCCATCAAGACTCCTGTTCCGGACGCCTGCGCTGGAGACCCTCGACACACTCGCCTGCAGCAGATCTCTGCACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102825:ENSDART00000168919:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.085
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF123083=Noelin-1=PU(44.9=93.6),PF127952=MscS_porin=PU(15.8=48.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]