DreINT0108880 @ danRer10
Intron Retention
Gene
ENSDARG00000063730 | osbpl6
Description
oxysterol binding protein-like 6 [Source:ZFIN;Acc:ZDB-GENE-070912-206]
Coordinates
chr9:1422093-1423362:-
Coord C1 exon
chr9:1423254-1423362
Coord A exon
chr9:1422197-1423253
Coord C2 exon
chr9:1422093-1422196
Length
1057 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TATCTGTGTGTGCGTTTCAGAGC
3' ss Score
9.99
Exon sequences
Seq C1 exon
GGTAAACCCAGTAGTTTTCCCTGGCAGCTGCCGCCGTCCTGCAGTAACGGGCAGAGTAAAGTGGCAGCCTGGTTGCAGGAGTCAGAGGAGATGGACAAATGTGCAGAAG
Seq A exon
GTAACATCATCATCATCATACAGATGTTATCATACTGTATCTGTACAAGATCAATACAGTTGAAGTCAGAATTATTCGCCCTCCTGTGATTAATTTATAATTATAAATACATTTTTTATTTATTTGTCTTTGTCAAATATTTCCCAAATGATGGTGAACAGATTCAGGAATTCTTCACAGTGTTTCCTCTAATATTTGTTATTTTGGAGAAAGTCTTATCTGTTTTATTTCGGCTAGAATGAAAGCAGTTTCTAATTGTGTTAAATCAATTTTAAGGTCAATATTATTAGCCCCCTTCAGCAATATTAGTTTTAGATTGTCTCCAGAACGAACCACTGTTGAGGCCCGTGCACACCGGGACGCTTTTTTTCTCGCATTTTTTGTCAACGTTTAACGCCTCGTGACTAAATAAAGGGCGACAATGTGATCGTGCACACCAACGCGCAAAAAGGCAGGCATAAAATCATCATTTTTTAGGAAACGCCTCATGCTCGTTTTTTTGTTTGGACACGCCGAGTCAAAACCTTCTCCACCAATCAGATCGGCACTTTTGTTCACGTGCACGGAGCTGCTGAAGTTACTGTAAACAGCACTTGGAGGCGCTCAAGAGCTAAACTGTCAATGCGAGCGCACATTGAAGAAGATGCCCAGAGGCGATATGAACGTGGAGCTGCTTATTGCTCTGCTGAACAATAATCATTTCTTCATCGCTAGAGCTGCTGCTTGAACCATCCATAACAACAGGCGTGTCAACTTTCTGTCTTCTTCTGTGTTACAAGCGGCTGTCAGAGGTTTGAAGTTGTGTAGCGCCATCTAACGTCAAGGAGTGATTCTGCACACTCTTCTGCTTGACGCCAGTGAAAATCGCTTGGGTTTGAATATGGAAAAACGTCTTGAAAAACACTGACGATAAACGCAAATGAAAAGCGTCCCAGTGTGTACGAGCCTTTATGCAATGACTTGCCTAATTACCCTAACTTCACCCTAATTAACCTAGTTAAATGTCACTTTAAGCTGTATAGAAGTGTCTTGAAGAATATCTGTGTGTGCGTTTCAG
Seq C2 exon
AGCTCGCCTACTGCCAGTCCAGTCTTTTAGAGCTGAATCAACTTCTGCAGAGTCTGGAGATCTTACAGAGGACACAGTCAGCTCCCAACTTCACTGACATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063730:ENSDART00000124777:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.383 A=NA C2=0.114
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTAGTTTTCCCTGGCAGC
R:
CTGCATGTCAGTGAAGTTGGGA
Band lengths:
206-1263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]