GgaINT0047051 @ galGal3
Intron Retention
Gene
ENSGALG00000009172 | E1BQU1_CHICK
Description
NA
Coordinates
chr7:16556266-16556963:-
Coord C1 exon
chr7:16556831-16556963
Coord A exon
chr7:16556370-16556830
Coord C2 exon
chr7:16556266-16556369
Length
461 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
TTTTTTGTTTTATGTTTTAGATC
3' ss Score
12.56
Exon sequences
Seq C1 exon
GTACAACAAAATAGCTTCCCATGGCAATCTCCTATACCTTGCAGTAACAGCCTTCCTGCAACCTGCACTACTGGGCAGAGTAAAGTAGCAGCCTGGTTGCAGGACTCAGAAGAGATGGACAGATGTGCAGAAG
Seq A exon
GTTAGTCTTTACTGTTTTGTGCCTTGCCCTTTTAGCAAAATGTCTTGTTGGTAAAAATAAATAAATAAAATAAGATACAGTCAATGGAAGTGGTTAAGTAGCATCTTTACGTGACTATGAGGGGGCTCTTTAGGTGATAAATGAGATGCTTGTAGTAGGAACTTCCCTCTTTGCTTGTGTTATAATGTTGCTTCTAAAATTTATTTTAAAAATATGTATTATTTTAATGGATATTGTTATTAAAGTATGCTGAACTTTTAAGGTCCAGTCTTATTGCTGACTGCCATAGAAATAACAAGTGCTCAACATCTCTGACCATAACGCTACTACTTAGATGCTTTACTATTGGGTCTGAGGCATTTGACTTTTGTATTACAATAAAATGCCAGTGGTGAACATTATGGCAAAGTAAGAAAATATCTGAACTAAAGCACCTAAAGTTTTTTTGTTTTATGTTTTAG
Seq C2 exon
ATCTTGCTCATTGTCAGTCAAACCTTGTGGAACTCAGTAAACTTCTTCAAAATTTAGAAATACTACAGAGAACTCAGTCTGCACCGAATTTCACAGACATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009172:ENSGALT00000014942:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.107
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAATAGCTTCCCATGGCA
R:
GCATGTCTGTGAAATTCGGTGC
Band lengths:
230-691
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]