RnoINT0105825 @ rn6
Intron Retention
Gene
ENSRNOG00000010812 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:RGD Symbol;Acc:1308887]
Coordinates
chr3:63408997-63411447:+
Coord C1 exon
chr3:63408997-63409129
Coord A exon
chr3:63409130-63411343
Coord C2 exon
chr3:63411344-63411447
Length
2214 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
AACATTTTTGTCTTCATTAGATC
3' ss Score
8.06
Exon sequences
Seq C1 exon
ATGCAGCCTAGCAGCTTTCCATGGCAGTCCCCCTTACCATGCAGTAACAGCCTCCCTGCGACCTGCACGACTGGGCAGAGTAAGGTGGCAGCCTGGCTGCAGGACTCAGAAGAAATGGACCGGTGTGCGGAAG
Seq A exon
GTTAGTTCCTGCCCCTGTGGCTTCTCGGAATGAGAACCCAGAGCTGATGATTCAAGGAAAACACTGCAGCTTCAGTCTCACCACCCAAGGGACCCGGCCTTTCTTCTTTCTTACACTTCTAGATCCTTCTCTGCTCTGTAACCCTGGCTTCTTAGCTGCCAATTCTCCCACCTCCTCACAAGTGGATCTGAGCTTCTCCCCAGCCATGGCTTCCTCATCTTCAACCTTTTCATCTCTTTATGAGTTCTTTCTCACTGCCTTCACTTGGGACCTAAAGATTCCCTTGGGATCCAAAGAACCTTCCAGTCTCATTCTGGGACTCTGCTGCCCTCCTCTCTGGGTGCCGTCCATGCTTCCTTCTCTGTGGCTGTGTTGCCCATGGATCCAGATATCCCATAGCTATGTTCCCGATAGCACAGAAGTAAACATTAGGATCTAGGGTGATGTGTCTGGAGTTCCGTGTGACTGGAGTTTCCTTGTGGCTAGGCCTTTCAGGATTCTGACTAGTCCATTCCCTGGGCTACTTAATCCATTATTTTCTCCTCCCCATCAAAGCCCTCTGGCCCACTTTATCCACTGGCCATTTCCATTCTGAAGCAGTTTTCACTCGACCCACAAACCTTACAAAGGCAAGGACAATGTAGACAGCATTCAGTAAGTCTCAACTGATTTTTCTTTTTAGATGCTCTTCAGATACTGTAAGTATTAATTTTGTTCTTTTATGGTATTATAATTAAACAGATGTTATGTAACTTTTTGAGATCTTCACTTAGGCAAATAAAATTGATGATCTGCATTAATCCCCCCCATACCCTCACCATTGTTTTAACTTCAAATTTGCATTTTCGAGACACCAAGCTCCTGAACTTAATCCACTCAGGGAACTATGATTTAAAAGGGATTTCACAGTCATAATCCTGTCCATTTGACATCTACCTAGAGTGTTTTCCTGGAATGTGTTCACCACATACAGCTTCCAGTTTTGGAAGGAGACAGATGACCTTCAGACAGCACTGTAAATTCCTGCCTTATTTGGAGACCACCCTGGCTCACCTGTCGGAAGGACAGCTACAGAGGCACTGCCTCCCTTAGCCCAGCCTCTACTGCTAGAAAAGAGGACTCAGACATTCAGACGTTCTCACAACCGAGCACCTATCTGAATGGGGTGCCCTGCCTTTCAACCTTACTCACTGGGGAAGACTCAACAAATGTCGTTCCGTGTGTTTTCATATGCCCACCTGTGAGCCTTTGGATAGGCTTTCCCAACACGAAGTTCCCTCTGTGCCCTTCTCCTCTTCCCTTCTCCACCGGTCTGTTTGGCTAAAACTTTTCTATCAATCTTCTAGACCCCGGTGTGTGTGATGGTGGTGGTGGGCTCTCTCTTGTAAATCTGCCCTCAAACCATGAAACAAGGAACACGCTCTCCTCTCCTAGTCTCTTACTGCACTTAAAAAAAACTATACTGTTCAGTTGTCATAGAACATGCCTACTACTGAGATGGGTTTCAGTTCAGAGAAAGGGAATATTTCATATTTATTTCATTGGTTGAATTTCAAAAGATGTAACATTTTTTGGAACCCTTTGTATGTCTGATTTATAGCGTCAGCAGTTAAGGTAGTCGTCTGTTTCAGACTTGCATGAATCCAGGTCTTAAATATATCGATAAATTGCTTGGCTCTTAGAGCATATTTTTCCATAGAGATGAAATTTAAATTAGTAAAACTCTACAGTAGGTTTTACGGGAACTGTTCCTTGCCACGCAATAAGTGGGCCGGAGAACAGATGCGTTCAACCGATTTTTACTCTTCTGTTTCTCTGAACTTGACTTTGCCTCCACCCAAACTCCACACCTTGTAAAGCGTTTCAGAGGGACAAGTCAACAGGACCCTAGGAATAAAACCACAAGCCTACCAAAGCCCCCGGAGTGTCCATGAGACGAGAGCTGTGAGGGGGGACCTCAATCCCACAACTGGGAGTGTTAATGGTACCTCCTCTCAGAGTCATAGTTGGTAAGAAAGGACTTTGAAACAATCTCACTGCCAGTAACTCCCCTGGCTCTGACCCAGAGCGAGGTATGCTCTGTGTTACCTGTCAGAGTCACCATCATGTAAACATGGATATCCAGTCACATGTGCACACTACATTGTGGACTAGGTCCCCTTTATTATTGCCATCTCCATTTCTATCCAACTCGAACATTTTTGTCTTCATTAG
Seq C2 exon
ATCTTGCACATTGCCAGTCAAACCTTGTGGAACTTAGCAAGCTCCTGCAGAACCTGGAGATACTTCAGAGAACTCAGTCGGCTCCTAACTTCACTGACATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010812:ENSRNOT00000068199:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.093
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]