HsaINT0118696 @ hg38
Intron Retention
Gene
ENSG00000079156 | OSBPL6
Description
oxysterol binding protein like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr2:178336301-178339094:+
Coord C1 exon
chr2:178336301-178336433
Coord A exon
chr2:178336434-178338990
Coord C2 exon
chr2:178338991-178339094
Length
2557 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
TATTTCTGATTTCTTATTAGATC
3' ss Score
7.38
Exon sequences
Seq C1 exon
ATGCAACCAAACAGCTTTCCGTGGCAGTCCCCTTTACCATGCAGCAATAGCCTCCCTGCAACGTGCACAACTGGCCAGAGTAAAGTGGCAGCCTGGTTACAGGACTCGGAAGAGATGGACAGGTGTGCAGAAG
Seq A exon
GTTAGTTCTTGCCCAGTGTGGCCTGAGAGTAAGCCAAAACCAAACAAGAAACAAAACCCGAAGAGGTCAATTATGAGTGCTACATCTTTTACCCTGATTGCCTTGATCGTCTTGACCTTTCCTTGCTCTTTCTCCCCCTTGTTCTTATTTTTATGCACCAGCTCCTTCTCTCTGCCATGACTCAGGCTCCTTACCTGCCAGTTCTCTTGCACCCTCACAGCAGTTGAATCTGGTTCTTGCCTTTCCCCTGACTTCTACCCACTTCAGCCTTCTCTCCTTGTCTTTTCACCATTTCCTTCTGGCTTCTTTAGCTCCTGGATCCTGGGGCAGTCACACAGAGGAGTAACCCCCAAGGAGAGCCTACTCTGCCCATGGTCCCAGAATCACTGCTCTGTCGTCCTCACTAGGTCACTTCCGCAGCTGCCTTCTCTTCTGCTCTGTCTTGCCCATGGAGCAGGTGTATGTTTCCTGACAACTCGGCAATAAATGGCAAAGTTGTAAAATGCTGCATCTTATATCCACAGTTACCTGTTAGTGTGCTCCACTGTGGATCAGTGATTCAATATTCTGAACCAATACCTGCTTCTCTCATACTGCCATCTCTGAGCCTCTTCATCTCTTCTTACCTTCACCTTCCTCGTAATTAGCCAGAGCACAATGGTTCAAACTTGATCTACAGACCATTTCCATTCTATGAGACAGTTTTCATTTGACCTTCAAAACCGAGAAAAACAAGGGCAATGCAGACACTGTTTAATACGGCTCAATTAGTTTATTTTTAGATGATCCTAAGATGATATTGGGCCTATTTTTTCAAATTATTTTTTCTTATAAAATTATAATAAAAGTAGATATTAGATCACTTTTTTGTGTTCTCACTTAAAAAAATTAAAATTTGGTAATCTATGTTAGTCCTCCAACCAAAAGAATTTTTTCTTACTCTACCAGCATGTGGACTCAAAGTATGCAGCATTTTTTGTCATTTTTATCAGCCTTCTGAGATACTCACATCCCAGACTTTATGTGAAAGTATGATTTCCTCTCTTTCTTATTGTAAATAATAGAAGTGACAAAGAATGATGTAGCATGGCCCAGGTGAAGGCTCTAGCAGGGTGATGAGACATAGCGCAGTAAGTATTTCTTAGAGACCATTTCTGGCTTTCATAGAACTTTCTCATCTACCATCTCAGTAAGCAGGTAGGAGAGCTAAATGCTACTATCACCATTTGACAGATAAGGAAACTACAACTGAAAAATCTAAATTGATGTCTCCTTACGCTTAGTTTTGAGTCCTTGGCCTTAAACTGAATTATTCACAAAGTTCTGTTTTCATTCTGTTAGAAAAAGGGTGATGGTTTTCAGCCCCAATTCCAGATTTCTATGCTTATATAGCACCATTTATATAGAACAATCACAAATATTAGGGAGTATGAATGTAATATTTCCTGGATAGAAAGCTCAAAATGAAATTTTTAGCAACTGACCACAAAAATAAGAAAAGTAACTCAGTATTCTCTTTTTTTTTTGAGACGGAGTCTTGCTCTATTGCATAGGCTGGAGTGCAATGGTGCTATCTCTGCTCACTGCAACCTCCGCCTCCCTGGTTCAAGAGATTCTTCTGCCTCAGCCTTCTGAGTAGCTGGGATTACAGGCACCCACCATCATGCCTGGCTAATTTTTGTAGAGATGGGGTTTCACCATATTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTCATCCTCCCACCTCTGCCTCCCGACGTGCTGGGATTACAGGCATGAGCCACCGCACCCAGCCCAATATTCTTGACCGTGTTTAATTTCACATATTAAAGGTCAGTTTTTTTTTTAAAGAGTGATATTTTATTGTATAGATTTTTAAATATTCTCTTGTACTAAATAAACCAAAAAATTTAAAAGAAAACTAAATGTCATTTCTTCATTCTAAACGTTAATTCAGACAGAATGAGTTGATGTCCAGGTGATGATGATATTGCTGGACCAGCGAATGCACTTTGAAAATCTGATTTGGTTAATATAATGTCTCTAAGAAATTTTAAAGTCATTCATTTCAACATTGTTAGTGAGCTAAATTACAGAAAATATGTTTAACTGATTCTGTATTCCGTCCTATTTTTCTGAACTTGATTTTAACGCTACCCAAATTCCAGATAACCATCTTCTAAAGCATGTTAGAGGAGCAGGTAGACAAGCTCCTAACAATGAAACCACAGGACTGCTGAAGTTCACTTGAGTGTGCTTCCCATGTGGCAAAAGCTATCAGAGCAGAAAAGGGATCACATACAGTGTGACTGAGAGTTTCATGGTTTCTGCACTAATAGCTATTAACTTTTAAGAGTGAGCTTTGAAATATAATGAATGGTTTTTGGTTCTGCACCAGAAAAGGGTCTGTTTTGTTTCACCTGCCAGTATCTTCATCATATAAACATGGATCTGCCTACTTATATTTGCCATAATTTGCATTGACCCTTTTATTACCATCCCCACCGCTCCCTACCCAATTTTAACGTATTTTTATTTCTGATTTCTTATTAG
Seq C2 exon
ATCTTGCACATTGCCAGTCAAACCTTGTGGAACTTAGCAAACTCCTGCAAAATTTGGAAATACTTCAGAGAACTCAGTCGGCACCTAACTTTACTGACATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000079156:ENST00000190611:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=NA C2=0.079
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development