BtaINT0106017 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014405 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr2:18524498-18530632:-
Coord C1 exon
chr2:18530500-18530632
Coord A exon
chr2:18524602-18530499
Coord C2 exon
chr2:18524498-18524601
Length
5898 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
TTATTTCTGATCTGTTTTAGACC
3' ss Score
9.74
Exon sequences
Seq C1 exon
GTGCAGCCAAACAGCTTTCCATGGCAGTCCCCTCTGCCCTGTAGCAGCAGCCTCCCTGCAACCTGCACAACCGGCCAGAGCAAGGTGGCAGCCTGGCTACAGGACTCGGAAGAGATGGACAGGTGTGCAGAAG
Seq A exon
GTCAGTTCATGCCCGGTGTGGGCTCTCAGGGTGAGCCAACAAGACGGACACAAAAGGGGCAAATTGCGTGGGTCCCTCACCTTTCAGGTTTCTCTCCTGTCCATTCTCCTGCACCCTCAGAACTACTGAATCTGGTTTCACCCTTACGCTGACTCCCACCCACTGCAGCCCTCTCAGCTCCTTTCCTTAGCAGTTTCCTCTGGCTTCCTTAGCCTCCCACACCCTGCACCTGGGGGCAATCACCCAGCTGAGTGCTGCCTTGGGAGCACCCCCCGCCCTCTCTCCTGACAGTCCCCTAGGTCACTTACACGGCTGCTTCTCTGGTGCTCTATCTGGCCTGCAGAACAGTGTGTGTTCCCCAACTACCGGCAATAAATAGCCATGTTATACCGCATCTTATAGCCACCATTACCTGGTGGTGGTGTCCCACTCTGGATCAGTTACTGAATGCTCTGAACTAGTACACAATTCCTTCACTATACCATCTCTCAGCCTCTTGACCTGCAGAAGCTTTTTCCTTCCATGTCATGAACTTGAGCATGTTGGTTCAAACTGGATCCGCAGACCATTTCCAGTCTGTGAGACGGCTTTCATTTGACATTCAAAAACGAAAAGAAAAAAGAATAACAGGTATTTAATAAATCTAAATTGATTTAATTTTTAAATTATTTTTAGGCGATATTCAGCCTCTTTTTTTAATATTAAATTTTTTCCTTTATAAAGTTATGGTGAAATGTTACATTATTTTATGACCTCACTTAGAAAAATTGAAATTTGGTGATCTGTGTTCATGCCCTGACCAAAACAAATTTTTTTTTGCTCTACACATGCGTGAAGTCAAAGTCTGCGGCATTTTTATTAGTTCTCTCCACATCCCAAGCTCAATATTTATGTGAAAAATATGACTTTGAGGGGGATGTTATATTCATTAAGTGTGTCAAACTAACATTCCATTGAAATGGTTTTATTTGATTGTATACACAAAACACACAAATATTACTTTGCCTTTATGAACTTCAGGTTGGGGAAGAAGCTGAACTCACTGTCCTACATACTGAAGACTCGCTCGCCTCTTTGGCTGTGCCAGACAGTCAGCCTCTCCTCTACTTTTTGCCTCCTTGTACATGCTTGTGGCATTCAACCTGGCCACCAGCGTTGTTGAAAAGATGGAGACTGTCCACCAGGACAAAAGTGCATTCATGTGGCCAAAATAGATATTGGCCTTGATGCCAAGAAGCCCGTGACTGGTGGGGGATGTCTCTGTCTCTCTGCATGCTTCTAAATACTCTGTGGTCCATCCCTGTGCCCTTTCGCCAGCCTTGGGGGTGACCCTCCTTTCTCCCCATCCTGACCTCTCCACCTGTGTCCTCGTCCTGCCATTGTCTTCTTCAGGATTTAGCGGAGGAATGATCTCTTCTCTTGGGAACAACCTAAGTCTTTCCCACTTCCCTTGTTCCTGCTTGTAGACTCCAGCTTCTCTCCCCTAAGTTGACTTGGCCCTTATGACTCTATGGCAAAAGTGTTCTTGGCAACAAGAGGCCATCTGATTTCTGCTGTGTTTTCAAGCCTCGTCCTCTGACCCGCCCTGCAAGACCTTGTCTAATGGGCCTCCGCTTTTAGGTCCTGTGAAGTTTTCCCTTTTTTTCCAGTTGTTCCTCCTCTGTTTCACTGGGATTCTACTCTGGTCAGCCTTGGTTGTAGGGATGGTCAAGATTGAGTATTCTGCTTTTAGCTTCAGTAATAATAAGCACAGTTTATTGAGTGCTCATGTGGGTCGGGCACGGAGTTAAGTACTTTACATATGTGGTCTTTTATACGTTTTCACAATAGTACCAAGCAGGAATTACGAGCCACATTTTTCTAAATAGGAAAACCACAGCTCAGAGAGGTCGAGTAACTTGTCCATGTTACACAGCAAGTACTTGGCAGAGTGCAGGGCTAACCCAGATCAGCTTGATTCCAGTGACTATGCTCAGCGCTTCTGAAACAACAGGCACGCTTCCAGCCGCAGTCTCTATTATTATGACGATAGTGATGATAAGATGGTAGTGGTCGTGGTGGCAGTAGATAGGATGGGTCACGTCTTGTGCAGCAGATGCTGTTCTAGGGGTTTTATATGCATTGACTCATTTAATCCTCTCAGTGCTGCTTTACAGGTGAGAAAACATAGGCTCAGAGAAGTCAGGTCACTTTAACCAAGTTGACACAGCTAGTGACGGTGGAGCTGGGATTCAGACTCATGGTCTGACTCCGGAGCGTATGCTCTTCATCACTGTACCGTATTTCCCTCAAAAAGGCTGAACACTGTCTGTATCTCAGACCTCTGTACGCAGCCTGTGCTGCATTCCCAGCCACTTCCTGCACTGTTGACACTTTTATTAATGCACTTGGTCACACTCTCTTCTCAGCCTGTCAAAAACCAATTCTGTCTCCTCTGTGGAAACCGCCCCAGTTCCTGGATTCCCCTGTGTTTGTCAGTGCTGCTGTCATAACCACTCCTGAAAACTCTGTCATCTCTGCCCCTCCCAGCCTGTTCATCCCGCGGAGGCTGAGGTCGTTATTCCTTTGAAACCCACCCCGCCCCCACCTCTCCTCCTCATCTGCCTTCCTCTGGAATTCCATTTCTGCCAAGCTAACTCATGCTCTGTCTTTGCTCACTGGCCTCTGACTGGTACCGCACCTCACTCTCTTGCTCTGTGACTCCGTGGCTCTCAGAGGCTCCTGGGGAGCTGCTGCTCTTGGATGTGTTCACAGATGGTGCCAGCACTTAGCGGGCATCATTCCATTGCCCTTGGCTATGAGATATATGTATTACTGCTGCCCCCACTTTGCAGATGAGGAAAGTGAAATGCGTGGAGGTTAAGGAATCTTCCCAGTTATGCACTGCCCTGATGGAGAGGCTGGGGCTCCAGCCAACCCACAGCCTCCAGCCAACCCACATTTACTGATCCCAAAGACAAATCTTTGTTCACTACATAAAATATATAGTCCCTCAAGACCTCTATTTCTTAAAATAACTTTTTGCAAAAATCTCTTCAAGTGGTTTTCTGTGGACTCGGGCTGTAGTCCAAACTACTTAGCCCAGCATTTCACATCCAATTTTAAGCTTTCTTGCCCTGCCTACCCTTTCAACCTTGCCTTCCAGAGGCCAAATTGAACTTGCTATCTCCAGAGTGTCCTTGCACGTTCCTGCCTCCATGCCTTTGCACAGGCTGTTCTTCTCAACCTGCTGTGACTGCTCTGCCCTTCTCCATCTTCCTGTTTTTCTGAATCCTCTCTCAGTCCTCCAGACCCACAAAAGTTTCCACTGTGTTATCTACTCTGACAACCTCAAACCACAGTAACTATCCCTTTCTTGAACTACCACAGCACTTTGTTTTTGGTCTATTCTGATCATTTTAGAGAGTCCCATCATTGAGGTTGGTTGCAGTTCAGAAGTTCATCATGTAACATCTTCTTGAACCCATAACATTTATAGTTCCAGTACTTAAAGAGGTTAGCTATTCATGGGTCTGGATGTCTGTCAATCCATATCTCAAGTATGTAAGGGAGTTTCTTAGCTCTTGGAGAGCATTTTTTCTCACAGATGCAAAATGTTAAATTAGTATTTTATATGCCTTCCTTGTGTACCAGTATATCCATCACTAAAATGGGTACATAATAGTTTAAGGTACAGATTATTTATTGTATATATTTTCTTTAAACCAGAATGTAAATTCCATAAATCTTACTTTATCGCTATATTCCCTATGCTTAGCCCTGTGCTGGTTGCCTACTGTCTTCCTAACCAGCGGTACCCAAATGAAATAGTAAATGGATAACTTTGGATGTGCTCTGAGTGTGTAGTCATCAGTTGTGTCTGACTGTTTGCCACCCTTTGGATTGTGGTCCACAAGGCTCCTCTTTGTGTGGGATTTTCCAGCAAGAATATTGGAGTGAGCTGCCATTTCCTTCTTAGGGGATCTTCCTGACCCGGGAATCAAATCCGTTTCTCCTGCGTTGCAGGCAGATTCTTTACCTACTGAGCCATCGGGGAACCTTAATTAATTTAGTTATTGCACAATTGGATAACATATTTCTTTTATTTTTTTAATTTAACTTTTTATTTTATGTTGGAGTATAGTTGACTTACAATGTTATATTCATTTCAGCAAGGCAATTCAGTTATACATATACATATATTCACTCTTTCAGATTTTTTCCCCATATAGGTTATTACAGAATATTGGATAGAGTTCTTTTTAGGACAAAGTAGGGATGATGAGAAAATAAGTAAACCGGTATATACTTAAATTTTCAATTTTTTACTATTATAAACTATCTCAACAGTCCTTTATTGGCATAATTTTGCCTTTTTCCCAGATTCTAAAAATAGATTTAATCTTGATTTAATGAAATTCCAGAGATTTTTTAAAAAGGTATTTTTATTGTCTTGGGTAAATTTTTATAATCCTTATGTACAATCAGACACCTAGGCAAGGAGTAAAATTCTGCCAGGGATTTCATTTCTTCCATATTTTTTTTAAATTTTATTTTATTTTTAAACTTTACAAATTGTATTAGTTTTGCCAAATATCAAAATGAATCCACCACAGGTATACATGTGTTCCCCATCCTGATAGAAGTGTCAAGAAATGGTGAGGCTTGTTCCAAGTTAAGGCTCTAGAAGAATGATTAGACATAGTGCAATTAATATTCCATAAAGACAGTTTCTGGTTTTCATAGAATTTTCTCAGTTGCTACTTTCATTAAGAAGGTAAGAGAGTAAATATTAACTGTTACCACTCAACAGGTAAGAAAACTACAGCTGAGAAATTAAAATAAATCAATGTTTCCCAACCCTTAGTTTTGAATCCTTTTGCCTTCAATCAAATCCATTCTCTTTCCATTCTGTTAGAAAGGATTTTAAGCCCCATTTTTAGATCTCTATACTACCTACATACACCATTTGTATAGAATAATCACAGTTATTAAAGAAGAATGAATGTAAAATAGCAAATAGAATGCTTACTGGATAGGTAGTATTAGGCTATGTCCCTGTCAGCATGCTCATGGATGCAGTTTTAAGGCAAGTTAAAATGAGGTCTCTTTTCACCATCTTCTTTCTCCTCTTCCCTCCAACCCCTTCCTTCTTTCTTTGTACTGCTTTTCTCTCTCATCCCTTCCCTTTATCTTTTGTATTTCCTACCCATCCAAGCCACTTGTTTTATTTTCTTCATGGGGGAAATGGGAGGAGTATAATGGTGCTGCCTCCCCTGAAATGAGGAGGGAGTGATGGAAGGGTCCTGGCCTCCTCGGTACTCTCTTCTGCCGCCTCTGTTAGGTCATTTCCTCTCTTGAGGAATTTAAAGGCCACTGATGGCCAAGAGTTCCCTGGAAGAGCCACAGCAGCACTTGAACAGCTCACCCAGACTCCAGCCTAGGGCAGATGCTGCTGAGAGGTGGCGCCTGGGTGGGGCCTGGCCCCTATTGTATTGCTGCTGCCCTGCTCTCTGTAGGGTGTGCAGGGGTTCTGAGTCCTACACACGAAGACCTTCACAGCAGGTAGACACGTTCCTAACAGCAAAACTGAACCACCACTGAAGTTCCCTGGAGTGTGCTTCTAATGTGACAAAGGCCATCTCAGCAGAATCTCCCAATTTCACTGAGATTTTTAATAGCTTTCTACACTAATTGTTCATCTGTAAGAGTGGGTTTTGAACTCATCCAATAAATTATCAGTGGTTTTATGGTTCTAAACCAGAGAAGGGTCTGTTTTCTTTCATTTGCCAGTATCATCGTCCTTAAACATAAATCTACCTGATCATATTTGCCATAATTTGGATAGACTGCCTGTTATTATCATCACCACCACTTCCTGCCCAGTTGTAACATATTTTTATTTCTGATCTGTTTTAG
Seq C2 exon
ACCTTGCACACTGCCAGTCGAACCTTGTGGAACTTAGCAAACTCCTGCAAAATTTGGAAATACTTCAGAGAACTCAGTCAGCACCTAACTTTACTGACATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014405:ENSBTAT00000019160:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.114
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]