HsaINT0118696 @ hg19
Intron Retention
Gene
ENSG00000079156 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:16388]
Coordinates
chr2:179201028-179203821:+
Coord C1 exon
chr2:179201028-179201160
Coord A exon
chr2:179201161-179203717
Coord C2 exon
chr2:179203718-179203821
Length
2557 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
TATTTCTGATTTCTTATTAGATC
3' ss Score
7.38
Exon sequences
Seq C1 exon
ATGCAACCAAACAGCTTTCCGTGGCAGTCCCCTTTACCATGCAGCAATAGCCTCCCTGCAACGTGCACAACTGGCCAGAGTAAAGTGGCAGCCTGGTTACAGGACTCGGAAGAGATGGACAGGTGTGCAGAAG
Seq A exon
GTTAGTTCTTGCCCAGTGTGGCCTGAGAGTAAGCCAAAACCAAACAAGAAACAAAACCCGAAGAGGTCAATTATGAGTGCTACATCTTTTACCCTGATTGCCTTGATCGTCTTGACCTTTCCTTGCTCTTTCTCCCCCTTGTTCTTATTTTTATGCACCAGCTCCTTCTCTCTGCCATGACTCAGGCTCCTTACCTGCCAGTTCTCTTGCACCCTCACAGCAGTTGAATCTGGTTCTTGCCTTTCCCCTGACTTCTACCCACTTCAGCCTTCTCTCCTTGTCTTTTCACCATTTCCTTCTGGCTTCTTTAGCTCCTGGATCCTGGGGCAGTCACACAGAGGAGTAACCCCCAAGGAGAGCCTACTCTGCCCATGGTCCCAGAATCACTGCTCTGTCGTCCTCACTAGGTCACTTCCGCAGCTGCCTTCTCTTCTGCTCTGTCTTGCCCATGGAGCAGGTGTATGTTTCCTGACAACTCGGCAATAAATGGCAAAGTTGTAAAATGCTGCATCTTATATCCACAGTTACCTGTTAGTGTGCTCCACTGTGGATCAGTGATTCAATATTCTGAACCAATACCTGCTTCTCTCATACTGCCATCTCTGAGCCTCTTCATCTCTTCTTACCTTCACCTTCCTCGTAATTAGCCAGAGCACAATGGTTCAAACTTGATCTACAGACCATTTCCATTCTATGAGACAGTTTTCATTTGACCTTCAAAACCGAGAAAAACAAGGGCAATGCAGACACTGTTTAATACGGCTCAATTAGTTTATTTTTAGATGATCCTAAGATGATATTGGGCCTATTTTTTCAAATTATTTTTTCTTATAAAATTATAATAAAAGTAGATATTAGATCACTTTTTTGTGTTCTCACTTAAAAAAATTAAAATTTGGTAATCTATGTTAGTCCTCCAACCAAAAGAATTTTTTCTTACTCTACCAGCATGTGGACTCAAAGTATGCAGCATTTTTTGTCATTTTTATCAGCCTTCTGAGATACTCACATCCCAGACTTTATGTGAAAGTATGATTTCCTCTCTTTCTTATTGTAAATAATAGAAGTGACAAAGAATGATGTAGCATGGCCCAGGTGAAGGCTCTAGCAGGGTGATGAGACATAGCGCAGTAAGTATTTCTTAGAGACCATTTCTGGCTTTCATAGAACTTTCTCATCTACCATCTCAGTAAGCAGGTAGGAGAGCTAAATGCTACTATCACCATTTGACAGATAAGGAAACTACAACTGAAAAATCTAAATTGATGTCTCCTTACGCTTAGTTTTGAGTCCTTGGCCTTAAACTGAATTATTCACAAAGTTCTGTTTTCATTCTGTTAGAAAAAGGGTGATGGTTTTCAGCCCCAATTCCAGATTTCTATGCTTATATAGCACCATTTATATAGAACAATCACAAATATTAGGGAGTATGAATGTAATATTTCCTGGATAGAAAGCTCAAAATGAAATTTTTAGCAACTGACCACAAAAATAAGAAAAGTAACTCAGTATTCTCTTTTTTTTTTGAGACGGAGTCTTGCTCTATTGCATAGGCTGGAGTGCAATGGTGCTATCTCTGCTCACTGCAACCTCCGCCTCCCTGGTTCAAGAGATTCTTCTGCCTCAGCCTTCTGAGTAGCTGGGATTACAGGCACCCACCATCATGCCTGGCTAATTTTTGTAGAGATGGGGTTTCACCATATTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTCATCCTCCCACCTCTGCCTCCCGACGTGCTGGGATTACAGGCATGAGCCACCGCACCCAGCCCAATATTCTTGACCGTGTTTAATTTCACATATTAAAGGTCAGTTTTTTTTTTAAAGAGTGATATTTTATTGTATAGATTTTTAAATATTCTCTTGTACTAAATAAACCAAAAAATTTAAAAGAAAACTAAATGTCATTTCTTCATTCTAAACGTTAATTCAGACAGAATGAGTTGATGTCCAGGTGATGATGATATTGCTGGACCAGCGAATGCACTTTGAAAATCTGATTTGGTTAATATAATGTCTCTAAGAAATTTTAAAGTCATTCATTTCAACATTGTTAGTGAGCTAAATTACAGAAAATATGTTTAACTGATTCTGTATTCCGTCCTATTTTTCTGAACTTGATTTTAACGCTACCCAAATTCCAGATAACCATCTTCTAAAGCATGTTAGAGGAGCAGGTAGACAAGCTCCTAACAATGAAACCACAGGACTGCTGAAGTTCACTTGAGTGTGCTTCCCATGTGGCAAAAGCTATCAGAGCAGAAAAGGGATCACATACAGTGTGACTGAGAGTTTCATGGTTTCTGCACTAATAGCTATTAACTTTTAAGAGTGAGCTTTGAAATATAATGAATGGTTTTTGGTTCTGCACCAGAAAAGGGTCTGTTTTGTTTCACCTGCCAGTATCTTCATCATATAAACATGGATCTGCCTACTTATATTTGCCATAATTTGCATTGACCCTTTTATTACCATCCCCACCGCTCCCTACCCAATTTTAACGTATTTTTATTTCTGATTTCTTATTAG
Seq C2 exon
ATCTTGCACATTGCCAGTCAAACCTTGTGGAACTTAGCAAACTCCTGCAAAATTTGGAAATACTTCAGAGAACTCAGTCGGCACCTAACTTTACTGACATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000079156-OSBPL6:NM_145739:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.092 A=NA C2=0.100
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)