DreINT0109105 @ danRer10
Intron Retention
Gene
ENSDARG00000088750 | otogl
Description
otogelin-like [Source:ZFIN;Acc:ZDB-GENE-050419-93]
Coordinates
chr18:6122451-6125168:+
Coord C1 exon
chr18:6122451-6122530
Coord A exon
chr18:6122531-6124259
Coord C2 exon
chr18:6124260-6125168
Length
1729 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
TAATGTCTCTTTCCCCTCAGGTG
3' ss Score
11.02
Exon sequences
Seq C1 exon
GCAAAGAAGATGGTAAAACCTGCAAAAGAGTCGCCATCAGAACCACCATCAGAAAAGATGACTGCAGAAGCAATGCACCT
Seq A exon
GTGAGTGTGAAAGATTTACACTACAATTCACCACATTTACACTACCATTCACTGCTGTATAGCGATTAATTTGCTTTCTTGCGTACAGTTGAAGTCAAAACTATTCGCCCTCCTGTAAGAATGTTCTTATTTTTTAAATAATTCCCAAGTGCTTTTAACACATTTTTAAACACAATGTTTTTTATAAGCTAATCCCTAGTAATTCATTTATTTAGTCTTTGCCATGATGACAGTAGATAATATTTTACTAGTTACTGTAGATTACAAGATACTAGTTTTTCATTTTAAAGTGCCCTTTAAAGGATAAACTAGGCAAGTTAGGTTAATTAGGCAAGTTATTGGAGAACAGTGGTTTGTTCTGTAGACATTCGAGAAAAAAAATCCTAAGACGGCTAATAATTTTGACCTTAAAAGGATAACAAAAACTGTTTTTATTTCAGGCAAACTAAAATAAATACGACTTACTCCAGAAGATTAAATATTATAGCAAATTCTGTGAAAATTGGTAATTAATTATATATATATATTTCCAACTTTTTTGGCTTTTTTTACTGTATATGTTGTCTCATTTAAAGATCTGCACGGTACAAATTTTTTAGTCCCGCTCCCGCAAGATTTTATTCTACACCCGACTGCTCCCTTTATTCTGCCTTTGTTTACCTGCTGCCTGACCCACCTCCTTTTCTACCCGACCTGACAGTTCCCACTAAATGTAGATCTGGTTTCCAAAATCTCGCGTTTAAATTGGGTACTACTGAAAGAGAGAGATCACAGATAAAACTCTAGGTTTTGCAAGGATTGTCGGCTAAATGTCAGTTTTGTTTGCCACTTTGTGATGAGACATAAGTGCTGCCTTAAACCTGAGGTTCCAGTCTTGTGACCACTAAAGGATAAAACTTTGAGGTATTATCACATTACTCACAAAAGGTAATTTAGACAGGGTAAAAGACATCAGACTTCCCTGAAGTGAGTTTCCTAACAGTAAACTGACCGTTTTCTAATGCAAGCTGATGAACAGCGCATTTTCACTTCGTTCTGCCCTGTTCGTAAAATTCGCTCTGAGGAGGACCGTTATGCAGATGATGCATGCACAGACTGTGTGGATAAAAAGCACGTGCAGATAGCACTGGCCATACGTTTAGCATGTGTAACAGTGTGTACCAGTGCTCAATAAGAATGAGGAAATCACAGACATGCTGTTCCGAAATAACATCGGGACTCAGGAACTATCAGGATCTATATTATTAGCTTGCCCGCTCCCATTCAAATTACACCAGAGTTACCGACCGCAGGAAATGTATTCCTGCGCCACAAGAAATCTGGTCCGGTCACGCGGTACAGCCGCAGAATTGCAGACCTCTAGCCTCATTCTCTTTTATTAGCCAATTTCCAATAACTAATCCCATAATATTTTACCAGTTATATTGCAGTAAACTAGTACTGTATTTAGTTTAAAATGACATTTAAAGGCATAACTAGATTAATTAGGCAATGGTTTGTTCTGTAGACAATCGAGGGCTAATAATATTGACCTTAAAAAATATAATAAAAAAAATTAAAAACTGCTTTTATTCCAGCCAAATTAAAATAAATCAGATTTTCTCAAGAAGAAACAATATTATAGGCAATACTGTGAAATTTTCCTCTCTTTGTTAAACAGCACTTGGGAAATATTTGAAAAAGAATACTAAAATTCACAGGAGGGCTAATAATGTCTCTTTCCCCTCAG
Seq C2 exon
GTGACCGTGTACTCATGCGATGGCAAATGTCCATCCGCCACCATCTTTAACTTCAACATTAACAGTCACGCACGTTTCTGCAAGTGCTGCCGAGAAAACGGCCTTCAGAACCGCATCATACAGCTGTACTGCACTCGAAACGCCACAACGGTGGACTATTACTACCAGGAGCCCATGGACTGCTCATGCCAGTGGAACTGATCTACACACAGGCCTGACTGTGACACATTATTCAATACAGTATCTGTATAACTGCAAAACTACTAACACCATCACTGTATTTGTTTTCTTTTATATCTGTAACTTATGTGTAAGTATGCTAATCACACGTTTATTAGAATAAGAACAAGAAAGGAACTGTTAAATTGACATTGTTTTCATTTTAAACTATTAACATTTGATAAGAGAGTACTTTAAGATAGTATTATAAGACTCCAAATACATTTTAAGCATGTTACCTGTTAACCAAACGCTTTATTTAAATGAATCCTTGTGCTTTTTCTAACAAAAATATTTTTGCATTTTGATTCAAATTGTTTTTTTTAAACAAAACAGCACTAAGTAGGTATTTAATATATGTTTTTAAAGAGAAATCCTACATTTGTTTTAGCCTCAACACACACACACACACACACACACACACACACACACACACACACACACACACACACAAAGAGAAAAATATAATACAATGAACTTGAATTTCCATATTATAGCCATAATGCCAAAAATATGATTTCTGAACAAAACTGTATGAGCCTAAAACAAAGCATTTAGTCAAATATCTGAAGACCTGCATGTTATTGTCAATGCTTTTTTTTTCTAAATAATCAAAATAAAAACACAAAAAATATATTTTTCTATGCACTGTGCGGATCAATCGCTTCATTTTTCTTTATGCAATAAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088750:ENSDART00000092804:53
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCTGCAAAAGAGTCGCCA
R:
AGTGATGGTGTTAGTAGTTTTGCAGT
Band lengths:
342-2071
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]