MmuINT0071240 @ mm10
Intron Retention
Gene
ENSMUSG00000091455 | Otogl
Description
otogelin-like [Source:MGI Symbol;Acc:MGI:3647600]
Coordinates
chr10:107760531-107763263:-
Coord C1 exon
chr10:107763184-107763263
Coord A exon
chr10:107762511-107763183
Coord C2 exon
chr10:107760531-107762510
Length
673 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
CTCATTATCTCTCCTTGCAGATT
3' ss Score
11.84
Exon sequences
Seq C1 exon
GCAAACGAGAAGAGCGAATATGCCAGAAAGTGATCATTAAATCCATCATAAAGAAACAGGACTGTGTAAGCCAAAGCTCT
Seq A exon
GTAAGTAGCTGTGTAAGAGTGGGTACATAAAGAACATGTGTGTTTCTGGAGCTCAGTGGGTCACTGACATGTGGGACTCTCAAACAAGCCGAGAACATGACAGCATACAACATTGAACTTTGAGAGTGTTCCTGCACTCTAATATTCAACCATTCTATTTCCAAATTATACATTATTCTTAGCATAAATCATCAACAGTTCTCAGTGGTAACTGAAATCCAGAGGGACAGGCACTCAATCTGCATGTGTTTGACTATATTTTATCTTTAGCCTTGTGATTTTGCACAAGGAGTGTATTCTGGGTTGTTAATTTACTCCTTTAAGAATGGCATGTTCATTTCTATGCACCACAGCATGATACCAGTGACAATAAAATTATTGGGCTAGGATTACGTCACTCCATATATGTACTCAGTTATACATGTGCAAGCCGTTCTTTGAATTATGTAAGCATTGCTTTATTCAGTACAACTGTGTAATGACCCTATGATGTATATATGAATCATGTTCTAATGTAATATTTCTATCCTCATTTATACACTTAGAAGTTTTTGGGAATGAAATGATTAAAAAAAAAAAAAAACAACGCTCTTACTGATCCCCTGAAGGAATGAAATGATCACCAGTATTGGCTGATTTTGCAGACCTCTTTTCTCATTATCTCTCCTTGCAG
Seq C2 exon
ATTAGTGTGGCATCTTGTGATGGGAAATGCCCGTCAGCTACCATATATAACATCAATGTTGAAAGTCACCTGAGGTTCTGCAAGTGCTGTCGTGAAAATGGAGTGCGAAACGTGACGGTGCCTCTGCACTGCTCAGGAAATGGCACTGAAGTAATGTACACACTCCAGGAGCCGATAGACTGCACATGCCAGTGGAACTGAGTGCTAGCATTCGAAGGAGGCTGCACGACAGTAACATGTCAGGCAGCGTCATCTTTCATCACTGTTATTTAGGCACATGGCAGACTTGCACCCTATAATGTGTCTTTACCACTCTTATGATTTGAAAACCTAACAGTGGACTTGAAATATGTATAGTTTTAATGGAAAAAATTAGATTTGTTGTTTTATTTTAGTGAATTAAATTATTGTAAGTTGTTTAGCGGAAATGCTGTCACATTTAAAGCTGTAGGGTAGGACAAATTAAGTCTTAGTGTAAAGTAGAAGCTTGTGCTGCAGAATGCTTTCCATTCAGTCCCTTGTGCCCTGGTTTTGGTTTTGGTTTTGTTTGTTTTGATTTGCAAAGTCTTCCGATGCTGTCCAAACTGAGGAAGACTTTAATTTTTCTTTCCTAGTCTTATCAATGTGATTAGTTGTAATTGGCTCATAGATAATCATAGTGAGTTGTGTTTCTTAGAAACAGAACATAGAATTGTAGGATGTTGGCTTAGTTAACACCTCAAAAAATATTAGGAATGCTATTGCAAATTCCCCTAATTATTATTATTTTTTACATGTGATGGTACCATAACATTTCTGGGACTTCTACAGCAATGTAGCAACAATGTGGCGAGTTTACGTTAAGGACTAGACTCCTTTCTAGATATTTTGGGTTCTGGTTTCATGATCGTTTATTGTAAATGATATAGCAAGGTGATTTTTAAAAAGTCACAGAATCTTCCATTACTAGAAAGCACTGGATAGGATTAAAACGTTTTTAAGACCAATATCCCTTTAGAATGCTCATGCATACAATAATAGTTATTTCAATTTTAAGGGAAAGAAAACCATAGTGTCGTTCATTATTTAGAGGAAGACCAGGAGCTATATTTTTATACCATTAAAATTATTAATTATATTGTTATTATTTAACATTTAGTTTAGTTAATGTTTATCACTGGGGACGGTTTCTAAATATATCAGTACACTATGAAACCTGAGGGCAACTTTGCCATTAAAACTGCTGCTTTGTCAGTGCAGGGACATACAGTTATCTGAACGTATTCATAACGTTAGAATGGAATGCCGCTCTCTGAAACTACAGAAAATCATTGACATTTGCAAATAACTTGCTCTGAGATCTTTGCAAATTTCCAAAGTCTTTCTACCAGGGAGTATAGAATTATTTGAGTTTCTTCCGTAGTAAAACGAGAGTGCCTTAGTGTGGTTATGATCATCAATGAAGGTCAGTGTCAATAAAAGCACATTAAAACTTCATCGACAAGCCAATGCTTGGATTTTAATAGGCTAGTGCCGACTTGAGCTATGTGACTTGTTTTCAAACATTAATGTTTCCATTTAAAAATTATGCTTCTAAGAAATACTGTAGTTATGAAGTGTTTGGATTTCCAAGGTCTCTTAATAATGTGTAAAAGTATTACCTGGAATGTCCTGATGTCTACTCTACATGAAAATGATTTACATTGTCTGTTTTAATACTGGCATTTTCTCTAGATATAAACATTTTTGCGTCTGTGATTATTAGCATATTGATGGAGTTGGACATTCTTGTCTAAATACATTAACATTTTACATAAAGACATCATGTATCTCAATCAGAAATTTGTAATATATGTTACCTATCACTTTCCTGTAAATTCTACTCTCTGTGGACTATCTATTATTAAATATTAACTGATCTTTAAATCAATTTGTGGGGAGAAGAGAAATATTCTTCTGCTATTTTATAAACAACAAATAAAATAAATACATGTTGAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091455:ENSMUST00000165341:57
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAACGAGAAGAGCGAATATGC
R:
TGATGAAAGATGACGCTGCCT
Band lengths:
342-1015
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types