MmuINT0071240 @ mm9
Intron Retention
Gene
ENSMUSG00000091455 | Gm6924
Description
otogelin-like [Source:MGI Symbol;Acc:MGI:3647600]
Coordinates
chr10:107199366-107200319:-
Coord C1 exon
chr10:107200240-107200319
Coord A exon
chr10:107199567-107200239
Coord C2 exon
chr10:107199366-107199566
Length
673 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
CTCATTATCTCTCCTTGCAGATT
3' ss Score
11.84
Exon sequences
Seq C1 exon
GCAAACGAGAAGAGCGAATATGCCAGAAAGTGATCATTAAATCCATCATAAAGAAACAGGACTGTGTAAGCCAAAGCTCT
Seq A exon
GTAAGTAGCTGTGTAAGAGTGGGTACATAAAGAACATGTGTGTTTCTGGAGCTCAGTGGGTCACTGACATGTGGGACTCTCAAACAAGCCGAGAACATGACAGCATACAACATTGAACTTTGAGAGTGTTCCTGCACTCTAATATTCAACCATTCTATTTCCAAATTATACATTATTCTTAGCATAAATCATCAACAGTTCTCAGTGGTAACTGAAATCCAGAGGGACAGGCACTCAATCTGCATGTGTTTGACTATATTTTATCTTTAGCCTTGTGATTTTGCACAAGGAGTGTATTCTGGGTTGTTAATTTACTCCTTTAAGAATGGCATGTTCATTTCTATGCACCACAGCATGATACCAGTGACAATAAAATTATTGGGCTAGGATTACGTCACTCCATATATGTACTCAGTTATACATGTGCAAGCCGTTCTTTGAATTATGTAAGCATTGCTTTATTCAGTACAACTGTGTAATGACCCTATGATGTATATATGAATCATGTTCTAATGTAATATTTCTATCCTCATTTATACACTTAGAAGTTTTTGGGAATGAAATGATTAAAAAAAAAAAAAAACAACGCTCTTACTGATCCCCTGAAGGAATGAAATGATCACCAGTATTGGCTGATTTTGCAGACCTCTTTTCTCATTATCTCTCCTTGCAG
Seq C2 exon
ATTAGTGTGGCATCTTGTGATGGGAAATGCCCGTCAGCTACCATATATAACATCAATGTTGAAAGTCACCTGAGGTTCTGCAAGTGCTGTCGTGAAAATGGAGTGCGAAACGTGACGGTGCCTCTGCACTGCTCAGGAAATGGCACTGAAGTAATGTACACACTCCAGGAGCCGATAGACTGCACATGCCAGTGGAACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000091455-Gm6924:NM_001177567:57
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGAGAAGAGCGAATATGCCA
R:
TCAGTTCCACTGGCATGTGC
Band lengths:
278-951
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: