RnoINT0106144 @ rn6
Intron Retention
Gene
ENSRNOG00000030316 | Otogl
Description
otogelin-like [Source:RGD Symbol;Acc:1589018]
Coordinates
chr7:51933890-51935142:+
Coord C1 exon
chr7:51933890-51933969
Coord A exon
chr7:51933970-51934941
Coord C2 exon
chr7:51934942-51935142
Length
972 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
CCCATCACCTATCCTTGCAGATT
3' ss Score
9.98
Exon sequences
Seq C1 exon
GCAAACGAGAAGAAAGAATATGCCAGAAACTGATCATTAAATCGATCATAAAGAAACAGGACTGTGTAAGCCAGAGCTCT
Seq A exon
GTAAGTAGAAGAATAGCTGTGGTTACATAAAGCACATGCGTGTTTCTGGAACTCGGTGGGTCACTGACGTGGTACTGACAAGTGAGCTCTAAATAAAATGACATACAATATTTAACTTTCAGAGTGTTCCTGCACTCTAATATTAAAATATTGTATTTCTGAATTATAAATTACTCTTCGCATAAACAATCAATTGTTCTAAATGATGATTGCAATCTGGAGAGATAAGTACTCGATCTACATGTCTTCGACTATATTTTGTATTTAACATTGTGATTTTGCCCAGGGAATGTTTACTGAGTTATTAATTTACTCCATTTAGAATGGCACATTCAATTCTATGCTGTACGTGCACCACAACACGATACCAGTGACAATAGAATTATTGGACTAGGATTAAGTTATTCCATGTATCTATTCAGTTTTGCATGTGCAAGCCATTCTTTGAATTATGTAAGCATTGCTTCTCGGCCTTTTGGCTAAGATCAAGTGAGTTATGTAAGCATTGCTTTATTCAGTACAACTGTGTAACATCCTTCGGTGTAGGTATGAATCATGTTCTAATGTAACATTTCCATAATCTTTTTTCCATCTTTATTAAATTGGGTATCTCTTATTTACATTTCAAATGTTATTCCCTTTCCTGGTTTCCATGCCAACATCCCCCAACCCCTCCCCCCCCCAGATGGGTGTTCCCCTCCCCATCCTCCCCCCATTGCCACCCTCCCCCCAAGAATACTGTTCACTGGGGGTCCAGTCTTGGCAGGACGAAGGACTTCCCCTTCCACTGGTGCCCTTACTAGGCTATTCATTGCTACCTATGCAATTGGAGCCTATAATCTTTTATACACATAGAAGATTGGGTAATGAAATCATTAAAAATACAAGCTCTGACTGACCCTGTGAAGGAATAAAGAATCGCCAGTATTGGCTGAATTTGCAGATCTCTTTTCCCATCACCTATCCTTGCAG
Seq C2 exon
ATTAGTGTGGCATCTTGTGATGGAAAATGCCCATCAGCTACCATATATAACATCAACGTCGAAAGTCACCTGAGGTTCTGCAAGTGCTGTCGTGAAAATGGAGTGCGGAACCTGACGGTGCCGCTGCACTGCTCGGGAAATGGCACTGAGGTTATGTACACCCTCCAGGAGCCTATAGACTGCACGTGCCAGTGGAATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030316:ENSRNOT00000043774:56
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAACGAGAAGAAAGAATATGCCA
R:
TCAATTCCACTGGCACGTGC
Band lengths:
281-1253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]