HsaINT0020315 @ hg38
Intron Retention
Gene
ENSG00000165899 | OTOGL
Description
otogelin like [Source:HGNC Symbol;Acc:HGNC:26901]
Coordinates
chr12:80377123-80379075:+
Coord C1 exon
chr12:80377123-80377202
Coord A exon
chr12:80377203-80377847
Coord C2 exon
chr12:80377848-80379075
Length
645 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
CTCATTGTCACTTCTTACAGATA
3' ss Score
9.11
Exon sequences
Seq C1 exon
GCAAACGAGAAGAAAGAATATGCCAGAAAGTGATCATTAAATCGGTCATAAGGAAACAGGACTGTATGAGCCAAAGCCCT
Seq A exon
GTAAGTGGAAAAATGTCATTTGCTACATAAATGCACACATCTTTTTAGAAAGTATGTGTGTTACAGAAAGAAGTTTGTAAGCCAACAAACTGCCAACGCTTAACAATATTTAACTGAGATTATTCCTACATTCTAATGTTGCAATATTCTGTTTGTGAAGAAGTATGAATTATTCTTAGCATAATCAGCAGTTCTGAATGATGGTTGCAATCCAGAGGGATAGAAATTGAATCTAAATGTATTTGACTACATGTTGTCTTCACTATGCAATTTTACTCAGCAAAAAGAGTTCTGCTTCTAACTTTGTCCCTTTTAATATGACCTGCAGTGTGCTTGAGCCATGATATGACACAGGTTACAATAGATTAACTATATTGTGATTAACATATTCCATATAGATTTATGTTGAGTTATGTGTGCACATTTAATGCTTTGAATGCTATGTTGAGCATTGCCATGAAACGTCCCTTTGACTTATGTGACTGATGTTTCATTTATTGTTTTTTACGATCTTGCAACATGCAGAAGCTTGAGGGTTGGAGTGATGAGGAAGAAAGATTTTCATCAGATTTTCTTAGTGGAATCAAATAATAACCAGTACTTTTAAAAGTTTAAGACTTTTTTTCTCATTGTCACTTCTTACAG
Seq C2 exon
ATAAATGTTGCATCTTGTGACGGCAAATGCCCATCAGCTACCATATATAACATCAATATTGAAAGTCACCTAAGATTCTGCAAGTGTTGTCGTGAAAATGGAGTACGAAACTTGTCTGTGCCTCTGTATTGCTCAGGAAATGGCACTGAAATTATGTACACTCTCCAGGAACCCATAGACTGTACGTGCCAGTGGAATTAAACCCTTGGGTTCCAAGAGCTCTATACAACATCATAACGTCAGATAGAATTAACTTTTATTGCTATTACTTAGGCATGTGGCAGATTTATGCTGTTTAACAATACTGTATTTTTCAGACTTGGAATGTGGAAATTTAGCAATTTGTACAAAATATATACAGTTTCAATAGCAAAATTAAATTTATTGCTTTACTCTATTTTAGAAAATCAAATGACTGTAAGTTGTTCAGCTGAAATGCTGTTATGTATTTAATTACAACTTGGTGCAGATACAGTATATTCTCATCAACTGGAAGGTTATTTTGCAAAATTCCTTCAATTTCACTCAGTAGCTCTTTTTTTCTTAATTTGCAAAGTCTGCTATAGCTATCCAAATTAAGGTACCCTTTAATATGTACTCCTTAATCTGGTAAATGTGATCAGTTAAAATTGTCATCTAGATAGCAATAAAGAGTGATATGCTTAGAGATAGATAATGGATTATTTAAAACCTGAATGGTTTATAGAGAAGTCATTATAAATTCCCCTCATTTTGCAGGTGTAACAGATAACCAGAGAAGCTGTGTGACTCGTACAAATTTATTCAGTGTAATAATATAGTAAATTCATGTTAACAGTTGGATTAAATCCTAGCTCTCTCTTATTCCAGTACTATATCACTTTTAAAATCCTGAGCAGTATGTAGTAAGAGTATATCACAGAATCTTTCATTCTTAAAGAGTTTGCATTGGATAGAATTAAGTATTTTAAGTTTAACATATTTGAAAAATGCCCCCCATACATTGTTATTCCAATAGTAAGGAGCAGGGAAATATAGCATCATTTGCTAAATAGAGGAGATAGATCTTGAACTGTTATTTTTTATATAATTAAAACTGCTATTAAATGTGTTGTCAGTATTTAACATTTAGTTACTGTCTCATTAATATTTAATTTTGAGGATGTACTTGCATACTGTTGAAGTTGAGTGCTGTTTTGCTGTTAATGCTGCTGCTTTGCCAATGAAGAATGAAATAAATTTATCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165899:ENST00000547103:57
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAGAAAGTGATCATTAAATCGG
R:
AGCATAAATCTGCCACATGCCT
Band lengths:
353-998
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development