DreINT0110743 @ danRer10
Intron Retention
Gene
ENSDARG00000101131 | pbx1b
Description
pre-B-cell leukemia homeobox 1b [Source:ZFIN;Acc:ZDB-GENE-070424-11]
Coordinates
chr6:2177486-2180702:-
Coord C1 exon
chr6:2180543-2180702
Coord A exon
chr6:2177599-2180542
Coord C2 exon
chr6:2177486-2177598
Length
2944 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GCTGTCTGTGCTCCTCTCAGGTT
3' ss Score
9.4
Exon sequences
Seq C1 exon
GTGTCTAACTGGTTCGGAAACAAGCGAATCCGATATAAGAAGAACATCGGAAAGTTCCAGGAAGAAGCGAACATGTATGCGGCCAGAACGGCTGTGAACGCGGCGAGCGTTTCTGCACACGGCAGTCAGGCAAACTCTCCGTCCACTCCAAACTCAGCAG
Seq A exon
GTGAGAACATGAACACCACACACAGACTCCACTCCCATCATGCTTCACTTCAGAAGGAGTTTGCATGTTCTCCCCATGTTGGCGTGGGTTTCCTCCGGGTGCTTCGGCTTCCCCCAACAGTACAAAGACATGCACTTTAGGTGAATGGGGTAGGCTTAAATTGTCGATAGTCTATGAGTTTGTATGGATGTTTCCCAGTGATGGGTTGCAGCTGGAAGGGCATCCACTGCGTAGAACATGTGCTGGATAAGTTGGCGGTTCATTCTGCTGTGGCGACCCCAGATTAATGAAAGGACTAAGCCGAAAAGAAAATGAATGAATGAACATAGTAAGATCTTTTTCTGGATTGCTTTTGAAAACACTGTCGGTTGGGTTCAGGCTAGGGGGTGGGCGTGGGTAACGGTCAGTCAGTCAGTTGGCAACAGTCTCGTGAGAACAGCAGGCGTGAACGGCACTCACTAGAGCAATATGAGATCTCAAAAAGCATACACATCGCCCTCTGGTGGATTCGTGAAAACAAAAACTGCACATGAACATACCTCCTGGGACATTTGGCGCACTCCAGAAATGTATATAGGGGTACATATCAATAATGCGCCTGGGTTGTGTATGAAATTTATTTTATAAATGTATTTATTTTGAAACTGATATGGCTCCAAAGTCAAGGCTCACATCTTCGATATGTAAATAAATGTGAAACAAGGAGTCACTAAAAAAAACTCTGATTTGCGCTGTATGCAAATGTTTATAATCTTTGAATCTAGTTAAAACGCACAGATTTATCCGACATTAAAACTATGAGAACACTGACTGTTCAATATGCCAATACATCTTTCATTTAGGTGATAGATTTAAAAAAAAAAAAAAAAGCTTCAGTTTTGAAAGATGTTCTGCATTTATTTGATCAAATATACTGAATTTCTGTTTCTAAATACATTTTAAGATTTTCTTCTGTTAATCACAGCTCTGTTTTTCAGCATCAGACCTCCAGCCTGTAGTATTACATGATAATTAGACATCATTCTGATTTGATGATTAAGAAGCATTTATATATATATATATATAGTTGAAACCTGTTTATTTTTTATGTTTAACAGATATATATTTTTAACAAATTTCTAATCATAATAGTGTTAATAACTCATCTCTGATAACTGATTTATTTTATCTTTGTCATGATGACAGTAAATAATATTTGACTAGATATTATTCAAGACACTAGTATTCATCTTAAAGTGACATTTAAAGGCTTAACTAGGTTAATTAGGTTAACTAGAAAGGTTAGAGTAATTAGGCACATCATTGTATTAATAAAGGGATTAAGCCAAAACCCAAACTTTTAAACAAACTTTTTTTTTTTTTAATCTAATTTTAAATTATTATTTTTATCTGCAAACAATGCTTTTTTATTTTAAACCCACACTTTAACTACACTGTTCAAAAAATCCTGGTTGCCTTAAATTAAAACTGAATCAAATTACCCTTATGAGTACATTGAACTTATATTTTGTTAAACTGGTTAAAACCGCTTGTGTAACTTATAAAATTAAGTTATAACATGATTAACTCAGTTTAACAAGTTACAATGAACTAAAAACATATGCTTTCAGGACTAATTGATATGTTATGACTCGGCCCACACGGAATCTGTGCACGCAGAATTCCGCAGATTTTCCGCAGAATTCCGCAGATTTTCCACAGATTTTTCGCAGAATTCTGCAGATTTTCCACAGATTTTCCGCAGAATTCCGCAGATTTTTAGCCCATAATTAATTCTGTTTATTTACTTGAGTAAATGTGTAAATCTGAATTTGTTCAGTTTTTATTCAGTAATTTGTTACTTTTTATTTAATATATTAAGGTTTTGGTTATGATACTCTGCTGGATACTCCCAAAATAATTCCGCAGAAATACGCAGATTTTTACCAAAATTCTCTGCAGAAATAGCAAAAAACGTCCGCAGATTCCGTCTGGCCCAAGTTATGACCAATTAATTTGTTACAGTAAATAGTATTTACTATTTATTACTATATCCAGTTGAAGTCAGAATTGTTTGCCACCCTGTTTACAGAGAGTGGATTTTTCCAACACATGTCTAATCATAATAGTTTTAATAACTCATCTTTAATAACTGATTTATTTAATCTTTGTCATGATGACAGTAAATAATATTAGACTAGATATTCTCCAAGACACTTCTATACAGCTTAAAGTGACATGTAAAGGCTTCACTAGGTTAATTAGGGTAACTAGGCAGGTTAGGGTAATTAGGCAAGTTGTTGTATAATGACGGGTTATTCTGTAGACTATCAAAATAATAAATAGCTTAAAGGGGCTAATAATATTGACCTTAAAATAGGTTTTAAAAAAATTTAAAACTGCTTTTATTCTAGCCGAAATAAAACAAATAAGACTTTTTTCAGAAGAAAAAATATTATCAGACATACTGTGAAAATTTCCTTGCGCTGTTAAACATCATTTAGGAAGTATTAAAAAAATAAAAAATAAAATAAGAGGGGCTAATAATTCTGACTTCAACTGTATATAACTTTCCTGTAAGATGTTTCACACAAAAAAATATACAAATGTCAGATAATAAAAAAAGAAGCAAATTATGCAATGTGACCCAGTTTCTGACTCGTTTATAATCTCTAAATGCATTGTTTTGTATTCATGCTTCTATGCATCTAAAAAAAGACTCCAGTTATTATTATAAATAGTCTGTATATAAAGGTGAAAAGCCATGTATACAGACATATGTGTGTTTTTCTCCTGCTGTGAGCCGAATCTCTCCTGCTTGATGTCTGTCTTCTTCATGCGCTGCTGGATCTCCTGCTCTGAAAACTATACAATCTGCATTTCTGCTGGCTTGAAGTTTCCAGACTCATTTCTCCTGCTTGTTCTGCTTCTCTATCTCTCTCTGTGCTGTCTGTGCTCCTCTCAG
Seq C2 exon
GTTCTGCAGGCTCTTTTAACATGTCAAACTCTGGCGATTTGTTTATGAGTGTTCAGTCTCTGAACGGGGACTCGTACCAGGGCTCTCAGGTGGGGGCCAATGTTCAGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101131:ENSDART00000165223:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.526
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(21.7=24.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]