DreINT0111655 @ danRer10
Intron Retention
Gene
ENSDARG00000063732 | pde11a
Description
phosphodiesterase 11a [Source:ZFIN;Acc:ZDB-GENE-070912-207]
Coordinates
chr9:1529691-1534282:+
Coord C1 exon
chr9:1529691-1529755
Coord A exon
chr9:1529756-1534149
Coord C2 exon
chr9:1534150-1534282
Length
4394 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
TCTGCTTGTCTTATCCACAGCTT
3' ss Score
9.24
Exon sequences
Seq C1 exon
GTGGTGAAGTTCACCAAGTCCTTTGAGCTTCTATCACCCAAATGCAGCGCTGACATGGAGAACAG
Seq A exon
GTGCGGCTAACACCAGGTTAAACAGACACACACACACACACACACACACGCAAACACACACACACGCACACACACACACACATACACACACACACACACACACACACACACGCAAACACACACACACACACACACACACACACACACACACGCACGCACACACACACAGCTCATAGAGAGTGTAGCTGTAGCACTAATGAGGCTGTTTCAGACTGCTGCTGCTGTTTGTTTGCTGTGAACTGCAGCAGGCGGCAGGTGGCTGATGCGTTTCCCTCACACTGACTACTGCTACGACCTATAACACACACACACACACACACACACACACACACACACACACACACACACACAGGCACTGCTGGAGAGAGATGTGACAGTATCACTGCCCGCAGGAGTGTTTGCTCTCAGTGTGTGTTTGTGTGCATGTGTGATATGGGACTTTGATATGGGAAACACCCACAACACAAGCCTAATCTTCATATTATGCATCCCGAAGACATTTAAGAGGCACTAATGAGCTTATTGTTGAACTGTGTCATACTTTATATTTCATGTGTGTGGCGCTGCAGGGTGTGTGTGGCGCTGTAGGGTGCATGTGATGGTGTGTGTGGTCCTGTAAACCTTCATCAGGTCTGTAAGGTGCACGCAGTGCTGTAGTGCACTAGTGTATATGCCGAACTCTAGTTTGTCAGCTAGGTCAGGGTTATTGTGTGGTCTCTGTTATCTGCAGCCCACACTCAGCACACCAGCAGGTCCAGCAGTGGAGTCTCAAAACCCTGAGTTCAGCTCTTAGAACACACACACACTTACACACGCACACACACACACACAAAGACAGAGCCATAGAGGAGAACAGGACGGAGAGCAAACATGTTCTCTCATGTGAGCTCCTGATTCTGTGTAGATGTGCAGATCTCAGCTGCCATATGGGAGCGTTCACACTGCACTGTGTGTTCAGTCGCACATGTCGCCTCATTCTCTGCACCTGTCTAATGTTGCAGCAGATCTGCGTCTAGGGAGATCACACACGCGCACACACACTGATGCCTCCAGCTCATCTGAGGTGCAATTCACTTTACATCTGGCTTAAACTGAGATATTAAAACCATAAATTGATTCCAGGATGCGTCTGATTTACTGTTAAAGCTGTAGAGGGACGTTTGGAAGTGCTTGACATGACAATAGTGCACCTCACGTCATTCATTCGTTAGAAGGGAATAGCAAACGAGGGAACAATCAAGAGATCTGGCAACCACCGGTAATGTCTAGATGGGATACAGCTGTGGATACCCGCGTCAATATAGCAGCAGTTTTGTGTAAAACACAAGGGCGGCACGGTGGCTCAGTGGTGTCCTCACAGCAAGAAGGTTGCTAGTTCGAGTCCCGGTTGGGTCAGTGGTACATGTTCTTCCCGCGTTGGTGAAGTGGTTACAAATTATTAGAAATTGAAAATCAAAGTAAATTTTTTCTTTCTAGTCTGTACACTTTCGTTTTATTAAGTAGACAATAAACGATTTACATTTTTCCGATTGGCTACTTCTGCCTGTAGGCTGCATAACTAATGAGGGGGAGGGGCTTGCTGCTCAAACAATACACAGACTCTGACGTGACGCAGCAGCAGCTCCGTGTTTCCTGTGTTTTTATTAACATTATTGTCCCTCATCAGGTGTGAAATATTGAAATCGTTATCAAAATGTGTTGAATATACGTTAGAGATATGAAAGCAACAAGTGTCATCTAATTAATCTGATAGTGTATATTAATATGAGTTCGTATTAACTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACGCTCTGCACTGTAATTCCAATGGCAACAGTGATGATTTCAAGTGAAGTGGTCAAGTGAATGAATATTATATGTATCAACATAACAACTAACAAAGGGAATATTGTTACAAAGTAACTATATAGTCACACAAAGTGCTATTATTTCCCATAGTTGGTTACAATGTATATATAAAGAGAAATATATGTGTACTAATTGTATTTTTGTATAATCAGACTTGATGAAATCAGTCTGCAGAAAGACTGTGATTGACATTCTCCCTTTGTATGATGTCATCAGAGGGGGAAAGCCCCGCCCACTAGTGACCATCTCTCCCTCATTAGCATATGACATTAGTTTTATTTGTGACTCTGCCACTGTACTGACACACAGCTGGTTCTAGCTCCGCCCTCTTTTGAAAAGAACCCAATCTCATTTGAATTTAAAGCGAACGTCACCAAAACGCCACAATTAGGATCAAAGCTTAAAAGTCTAACCACAGTGGAATGAACCGCCGATATTATGTACTTTACTTATGGAAATAACAAAAGAAATGCTTGATGCTAGTGCAGTATAAAGATGTTTAAGGATAGTGAGACAGTAGGACCAATAACTGTGTAATAAAAGGCCCTTTGGTCATTTTTGCGCGAGATGCTAATGGTCTAATCCGATACAATTATCTATGCTAAGCTATGCTAAAAATGTTGCGTTGCTTTAAGCTGAATACTAGAATCTTGCGAAATAAGCAGTAAATTTTAATTTACTCATTCATTTCTTCCTTATATATCCGCTCTGCACTGTAATTCCAATGGCAACAGTGATGATTTAAATGTCAACTGAAGAAACGGTCAAGTGAATGAATATTATATGTATCAACATAACAACTAACAAAGGGAATATTGTTACAAAGTAACTATAAAGACACAAAGTGCTATTATTTCCCATAGTTGGTTACAATGTATATATAAAGAGAAATATATGTTTAGGTCGGTTATAGGCTTTGTGTGTGTTATAGGACAATTAAACTGAAAAGTTTATTTAGGAAGAATCATATAATGACTTTATAGTAGTTTATAACAGTAATGTGCAGGGAATATGTTTGTGAATATTTTGTGATTTTATATATATAATATCTGTGAAGATGTTTACATATATTGTTCTACAATGTGAAAGTATATTTTTATGTGCATTCATTTAAAAAAAAAAACAATACACAGACTCTGACGTGAAGCAGCAGCAGCTCCGTGTTTCCTGTTTTTATTAACATTATTGTCCCTCATCTGCGGTGAGGGCGCTACATTGGTGTGTGTTTATTTCAGGTGCTCCGCTTTCCCCCACAGTCAAATCACATGCGCTATAGGGGAATTGATGAACTAAATTGGTCGTAGTCTATGAGTGTTTGTGTGTGAATGGGTGTTTCCCAGTACTGGGTTGCAGCTGGAAGGGTATCCGCTGTTTAAAACATATGCTGGAATAGTTGGCGGTTCATTCCACTGTGCCGACCACTGATAAATAAGGGACTAAGTTGAAGGAAAATAATGTACAATTAAAAAACAGGATACAGCATCAGTGCTGCATGTTCCCGCCGCACACAGGGAATTTCCTCAAGTTCTGTGTGTTATCTAGTAATTATTGGATCCTCTGTCGGCTCCTCTGAAGCTTCAGCCGGATGCATTATGTAAGGATGATTTGTCCTGCGCTCGCGGGCAGACGCCAGAAAGACGCGTTTCTGCTGCTCGTCCAGACACACACATTCATAGCGCTGTTGTGATGGAGAGTGTGTTTGATCAGACCAGATGAGAGAGAAACAGAGGCAGAAATAATACAGAGAACGGCGCATTTCTGTCACTAGTAATTCATTCATTCATTTTCTTATCGGCTTTATTATTTCGGGGTCGCCACAGCGGAATGAACCGCCAATTTATCCAGCAAGTTCGGATGCCCTTCCAGCCGCAACCCATCTCTGGGAATATCACTAGTAATTAATTGATTAAAAAACGAAGCACATTTCAATTAAAAAGTAATGATTACAATCAGAAATGAACAATTTTATATACAGCTGAGGTCAAAATTATTCACCCTCCTGTGAATTTATAGGCTTTAAGTATTCCTCAAATGATGCTGAACAGATTCAGGAATTGTTCACAGTGTTTCCTTTAATATTTGTTCTTCTGGGGAAAATCTTATTTGTTTTATTTGGGCTAGAATAAAAGCAGTTTTTAATTGTTTTAACACCATTTTAAGGTCAATATTATTCGCCCCTTCAGCAATATTAGTGTTGGATTGTCTCCAGAACAAACCACTGTTATACAATGACTTGCCTAATTACCCTAACTTTACCTTTACCTTCCATATAACACCATCATAGTGTTAGTCATATAATTTTTCTTTTATTATTTCAGCAAATATTATTATAAATAAACAGTTTGTTGTACTCTCCCATTCGCTGCGCTATAAGTTGACTAAATATGACGACTTCTGCTGCTGAGAAACCCGCCAATGTGAAAAGGCTCCATAGTGAAATCAATGGTTGAGTGATGTCTCTTTCTGCTTGTCTTATCCACAG
Seq C2 exon
CTTTAAGGACAGCATGGATAAATCCTCATACTCTGATTGGCTGATCAATAACAGCATTGCAGAGCTGGTGGCCTCCACTGGACTTCCTGTGAACATCAGCGACGCCTATCAAGACCCTCGATTCGACGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063732:ENSDART00000137230:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(14.5=100)
A:
NA
C2:
PF0159021=GAF=FE(30.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]