GgaINT0045454 @ galGal3
Intron Retention
Gene
ENSGALG00000009215 | PDE11A
Description
NA
Coordinates
chr7:16712330-16717179:+
Coord C1 exon
chr7:16712330-16712394
Coord A exon
chr7:16712395-16717043
Coord C2 exon
chr7:16717044-16717179
Length
4649 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
CTTGCTATATCTTCTGATAGTTT
3' ss Score
6.18
Exon sequences
Seq C1 exon
GTAGTGAAATTTACGAAGTCCTTTGAGCTGCTGTCTCCAAAATGCAGTGCTGATACTGAAAACAG
Seq A exon
GTTGGTGCTCATGTCTTCTATGGTAATGGATTGCTTTATTTTTCAGTTTTAAATATGCTTGATCTTGGCTTTTCTTTGTTATGGAACTTTAGATAGATTTGCTTGAAAAATGTCAGCTTACTGTTTTTACTTGAACAAGATTCCTCTTCTCACTTCAAATGGAAAAATGCTTTAATAAATACATGTTAACATTGCTATATGTACTGATATAACATTATATTAGCATCTCAAAAGAGAAACCAGGAAACTACTGATGATTTTTGTTGTTGAACTTGTGGAAAATACACAAATGTTGTTTTGCATAATAAGTGCTAGAGTAAAAAGTTACAAAATTGTTTTAAATTCTCTGTTGATCTTTTACAAAATGCCTCCTTACATTTGCATTGAAGGGTTTCCAGTAGGATTTGATTTCTGTTCTTGTCAAGTTGTAAAGCCTAATAACCTCACAGAACATATGCTAAAAATTACATTCCTGTGAGTAACTCTGGTGTGGGAGTCCAGTCAAAACAAATGTATGTGTTTTGCTTAATAGGATCTGTATTTAAACATTGATAAAGGGCTAATTGTAAGCAGTAAGAGAGCTTTTTGTGGGATTATTGTATTAATACCTACCAGATAATATAACTGGTAACACAGAAGTTCACATGAAACATCCTAAATATCAAATAAGCAGATGAAGTTTCAGGGATATTGTGAGAAGTTTTCTTCCATCTTTTAAGACCCTAAAGCAATGACTAACTCATATATATTGAGTGCAAAATAAAATGATACCAACTCTATATTATAATTTCCCATGTGGAATTGTTGCCATAATGGTGTAAGCCTTGCCTTCTGCCCATCTTGCAATACATAGCAGGCTTGAAGATTACTCTGTGCTTTGCCACATGCCCTTTTTTCAAGCAGCTTTTGAACTATATTTATGGATAATTTCCTGCCTTTAGTGCTTTTCTTCTCTACCTCCACTGCGGTAAGAAATTGACATTTCATTAAGGTGAATGTGCACATTGTACTCCAAATTACGACAGCTCCTAATTCTTAAGGTTTTTCATAGATTGATGTCACAGAATTACAAAATTTACTAGCTGACAGCAGAGTCCAGGTCCACACAGAAAGACAGACAGAAACTAGATCTCTTTTGTGCCCTAGCCACCACTGAAGAGATGGATTATTGAGAGAAAACTGAAAAGGAAAGCAAATGATAAAAAAAAAAAATCACTTTACAGTTTAAATATGAATAAATAATCTGTTTATCCATCTGGGAATCATAACTTAGTCCCTTTGAGAAAGAGCATCGGGGTACCGATTGCTCTTTCCTAGGTCAATTAAATGGGTGAATATACATCCCTTTTGTTAGGGGTCAGAGGTGTGAATTGAGAGATGTGGTTGTTATTCCCATCTTTGTCATACTTGATCAGTAGCCAGATTAGTCAACACAGTGTAGACTGGTGTCAAAATAACCAAGCTGGCTTGTTTCTTGTTACCATAGTTATGTTAGCATGTTACCAAAAAGCAATTTGTAGTAGTCTGCACTGTTTGTAGTCAAGATTGTTTTAACTTCAGTCAGAGAGATGAATAAACACATGCAAACTATTAGTAAGAATTATAAACATAAATTTCTGTGCATTTTAATGTAAAGACTGCTTTTCTTTCTTTTTTCCATCCAGCGGGGGGAGAAACTGGTTTTTACAAAGATAAAGTTCAGACTGACAGATATGACGTCACGTTTGGATCTAGCACAGGCACAGCTTGAGTTGTTGGCACTATAGTGGGAAAATAAAGGTTATTTAGGATACAGAACAATGCCAGAAGCCCTTGGCATTTGAGCATTTCTTCTAGTGAGTTTTGCCCTTTTCATTCCACATTCTATGGACTTAACTAATGTAGCGTCATATAGGAAAAAAAAATGGCAAGATGAGTTTCTTAATAATGACTCCAGTGGAGATAAATATTACTATTTTGAAATTTCAGTGGAAATCCAAAGAGATTATAACTAGAACCATTCTCAGCCTCTAAGTTTTATTTGAAGGAGAGAGAAAGTCCAAGGACAACATATCGTATTAGGTTCTAACTTTTCCTCCTTTGGTTTTAGAATAAATTAGTTTTTCTTTTGCCTTTTTCATCTCTGTGTGGTAAAAGTTTACCAATTTAGTCCTTGAACATTATAATGAATACTCATGTCTTTTTTTCTTTGCTGTTGGTTATAAAGAAATACCTTGCAAGACCGCACTTGAATTTATCTGTTCAGTTTGACAGATTCCAGCACATGCCAGGATCAAGTTCAGTTCTGATTCATAAGATACTGTCCTTTATGACAACCACTTTATTCTTGAAGTGCAGTTTTTAAAGTTTTTCTCTCTTTGAAAGAAAGCTACCTGAATCTTTGAAGCCTTGAGTTCAGTTTGGATGTATCCTGGGTACAGGGGGGCAGGTGCTGTGAGCCATGTCTTTCCTGCACTGAAGGCATCTTAGTGGATGAAGTAGCTGAGATTGCTATTCAATAACTTAAATATCAGAGGCAGTGAGAAGGTGAGCAACCTTGGCTTGTGTGAGCTGCTTGCTGAGAAAATATCTGAGCTCCTTCCCATTTGGGCAGGCACAGAGAAAGTGCAGAAATCCATGCTACTGCTGTTTCATTGCTGTCATCCCTAGGAATGATGCTCACTTCTGCACCACCTCATTCCATGCAGTGTTTTTATGCTTCTTAAGGCATCTTTCTGCTCTTCTAGTCATAGGAGTAGAAAGGGTTTACATGAATTTAGAGAGGATTAAAGGTAGCTGTGCTTCTGGCTGCCCCTGTCAGAGAATATCTCTTTTGGGAAGATCACAAGAATGCAGCTGTGTGAGGGGAGCCTGCAGCACCGCTTGGTGCTCTTAGAGCAGCAGAGTGTTCTTTTCTGTCTGGCACATGATGCTTCTGCCTGTATGTAGGCAAAACAGGAGGCAGTGGCATACAGCTGCCTGCATTAGTCCAGTAGCTCAGCCCATGGCTTTCCATGTTATGAAGGATATTGTTGCTTGTGATTTTTAGAGGCAATTTGGATTGTTCTGAGCTGCTGAGAAAAGAGAGGGAGCCAGCTGGCTGTGATGTGCATCAGAATTAAACATTGATATTTCCTCTGGTGAAAGTCAAGTGTCTCTCTTCAGAGCGTGGTTGTAAAACACTTGCAGGGATTGGGAATGATGCAGTAGAACATACTTTTAAAACTTATTCCTGACTTGAAATTATTTACTGTTTAAAATGCTGGACAGTTATACTCCAAACCCAATTTAAAGTGTCTTACATTATAATGAAAGTATCCAGATTTTTAAGACATGAAGTGGGATCTGTGCATAAGAAATTACGTTCTTATCCTGAAAGATCTTTTTCTTTCACTTCTCAAGTATATTGATGTCCTGAAATAAATCTTATGTCATACAAATAAATTTTCTCACTTAGCTCAAAAATATTTTCTTTCAGTAAAGGCTTCTGTCAAAGTGCACATGCAACATTTATTACAGTCACTCAAATTCCTTATCCCAAATTAAAGCTGATACACTTAGATTTCTTTGTGTAAATCATTATTATTATCTTTATTTATAGCCTTTTAGGAATATTGGGTTTTCTTTCAAAGGAATGACTTAGTGGAATTAACTTCCAGAAAATTAATGTGGCCAACAAAAATCAATTCTTTCATTCTGATTGAGTCTTCTGAGCATTTTACTGTGCATATGTCTTCATCTTATCCACTACTTTGACGTTTCAAGCCATTGTGGTCTTCTCCACAGCTGTTCAGTCACTTTCTTCTTGGTAATGTCTCAGGTGTTGATCAGTTTTATTCTCAAAGCTGATAGTATGCATACAGAGATTCACACAAATGGCTACTGCTTGTCAGTCATAAAAACATGTTTGCAGTAAGTCAGTGAGAATTTTCCCGCTGAGTAGATAAGTGAATGGGTGAGGATTTTCAAGGTCTGTGTAGACACTGAGTTTTCAGTACGAGATGAGGTGGAGTGTGGTGTGTTGAGCTCACATTTCTTGTATTTTATGCTCTGTAGCCCTTTAGTAGTTGTGGCAGAAGGTCAGTCAAGGAGGAAACATTCATGTATTATATATCTACCAGGATCCACCTACTGTAACACACTTACATTATTGATTTCAAGACTCATTTCACAATCCCCTTCTACTTGCCACTCTGATCTAGCACTGCAGATGAAAATTAAAAACAAAAACCATTTCACATGACAAAGAATCATTGGAAATATGGACTAAAATACCCAAGTTATAAGCCTAATTTGAAAAATTAAAATCTGAAATTCTGTGCTTTCAGGTAGCTTTACAGAAAATTTTTAGTACTGGTTTCAGGTTTATTTCCCACAGAGATGCGAACATGATCCTGTTATTGATCCATATGTCAGTGGATTTCATTATTAAATGTGTAAGTAACATGAAAGATCAGTGCTATTTTCAGTAAAAGGAGTTGTGTAAAGGTGATTTTTTTTTTTATGTACTCTTTCAGTAAATAGCAAATTATTGCTCCACAGATAATGCTTAGTAACCATTAGTAACTGTAAACAGTTCTGCAGTTCCTATGAGAATGCCTGTAAAACGTGCTGGACTTTCAAGCAATGTTGACTGTGTTCTTTCCTTCTCTTGCTATATCTTCTGATAG
Seq C2 exon
TTTCAAAGAAGGTGTGGAGAAATCACCATCTTACTCTGACTGGCTAATAAATAACAGCATTGCTGAACTTGTAGCTTCCACGGGTCTCCCAGTGAATATTAGTGATGCCTATCAGGATCCTCGCTTTGATGCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009215:ENSGALT00000014999:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(13.3=100)
A:
NA
C2:
PF0159021=GAF=FE(28.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]