DreINT0118159 @ danRer10
Intron Retention
Gene
ENSDARG00000044431 | ppig
Description
peptidylprolyl isomerase G (cyclophilin G) [Source:ZFIN;Acc:ZDB-GENE-040426-2822]
Coordinates
chr6:3535779-3536031:+
Coord C1 exon
chr6:3535779-3535886
Coord A exon
chr6:3535887-3535986
Coord C2 exon
chr6:3535987-3536031
Length
100 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTCA
5' ss Score
0.87
3' ss Seq
GATTCTGTTTGCTTTCATAGGGA
3' ss Score
8.71
Exon sequences
Seq C1 exon
GTGAAAAAGGAGTTGGCAAGACTACTCAGAAACCATTGCATTACAAAGGAACTCCTTTCCACAGGATAGTGAAGGATTTCATGATACAAGGAGGAGATTTCAGTGAAG
Seq A exon
GTGTCACTTTACTGTTGTTTTTTCTTCAACCTCATCTTTTACATCCGTTATGTGAATGACATTTCATACAGTTTTTTCTGGATTCTGTTTGCTTTCATAG
Seq C2 exon
GGAATGGCAGAGGTGGTGAATCTATATATGGAGGTTTCTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044431:ENSDART00000065256:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(21.7=100)
A:
NA
C2:
PF0016016=Pro_isomerase=FE(15.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAAAAGGAGTTGGCAAGACT
R:
AGAAACCTCCATATATAGATTCACCA
Band lengths:
147-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]