GgaINT0048371 @ galGal4
Intron Retention
Description
NA
Coordinates
chr7:18129173-18129820:-
Coord C1 exon
chr7:18129713-18129820
Coord A exon
chr7:18129218-18129712
Coord C2 exon
chr7:18129173-18129217
Length
495 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
CTCACATTTCTTCTTTCAAGGAA
3' ss Score
8.89
Exon sequences
Seq C1 exon
GTGAAAAGGGTACAGGAAAATCCACCCAAAAGCCATTGCATTACAAAAGTTGTCTGTTTCACAGGGTAGTGAAAGATTTTATGATCCAAGGCGGTGACTTCAGTGAAG
Seq A exon
GTATGACAAGAATCTTTCAAGAAAAATTTAATGTTTATGCAGTAGAATGTTTTGGGAGTCCTATTCAGCATCTTCAATTTACGTTAATTATGCAATTTAACTGCCTTTCTTACCTACTTCTGGCATAAGAAACTTTGTGTTTAAATTTGTGTAACAAAATTACATAAATTTATATGCACGTAATCTGTGGCCTCACATCTCAGAGCATTAAGTACTTAATTGCAAGTTATAAATATGAGGATAAAATATATCTCCTGCTGAGAAGTAATGAAAAAAGGGAGCATATAGCAGAATGCGTAGGAAAACTTTCATTTTTCTCCAGGTTTGCTTCTGCTTAATGGTACTATGAAGGTGTGTCTTGATCTTTGCATATCTTGGAGAATAATGTTAGTGACTTGGATGCAGCTATATCAGTATTTTGCATTATGAGGCATCTTTCACGTGATGCAACTTTTTACACTATTACAAGTTTTAACTCACATTTCTTCTTTCAAG
Seq C2 exon
GAAATGGCAGGGGAGGAGAATCCATTTATGGTGGCTTTTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009839:ENSGALT00000015996:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(21.7=100)
A:
NA
C2:
PF0016016=Pro_isomerase=FE(9.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]