RnoINT0115973 @ rn6
Intron Retention
Gene
ENSRNOG00000007673 | Ppig
Description
peptidylprolyl isomerase G [Source:RGD Symbol;Acc:620315]
Coordinates
chr3:55969748-55970173:+
Coord C1 exon
chr3:55969748-55969855
Coord A exon
chr3:55969856-55970128
Coord C2 exon
chr3:55970129-55970173
Length
273 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
AGAGTGTTTTTCATAACTAGGGA
3' ss Score
6.15
Exon sequences
Seq C1 exon
GTGAAAAGGGGACAGGGAAATCAACTCAGAAGCCATTACATTATAAGAGCTGTCTCTTTCATAGAGTTGTCAAGGATTTCATGGTTCAGGGTGGTGACTTCAGTGAAG
Seq A exon
GTGAGACTTTGAGTCCCATAAAAGACCAAGAAATTTATATTTTTTGTTAAATATAAATTAAAGGTTTCTGGTAGTGCATGTTGAACGGGGAAGTGGAGATCAGATGACAGTTTACAAGAGTCAGTCCTCTTGTCATTGAAATTATATCGATGTCTTATAATTTGTTGTATTCCTTTGAGTGTTAATGATGCAGAATCATTTGTATACGTATTTGATGAGAAGTATTTGACTGAGTTTACTATCCTGAGTTCTAAGAGTGTTTTTCATAACTAG
Seq C2 exon
GGAATGGAAGAGGAGGAGAATCAATTTATGGAGGATTCTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007673:ENSRNOT00000010216:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(21.7=100)
A:
NA
C2:
PF0016016=Pro_isomerase=FE(9.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAAAGGGGACAGGGAAATCA
R:
AAGAATCCTCCATAAATTGATTCTCC
Band lengths:
148-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]