MmuINT0124740 @ mm9
Intron Retention
Gene
ENSMUSG00000042133 | Ppig
Description
peptidyl-prolyl isomerase G (cyclophilin G) [Source:MGI Symbol;Acc:MGI:2445173]
Coordinates
chr2:69570875-69571290:+
Coord C1 exon
chr2:69570875-69570982
Coord A exon
chr2:69570983-69571245
Coord C2 exon
chr2:69571246-69571290
Length
263 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
AGAGTGTTTTTCATAACTAGGGA
3' ss Score
6.15
Exon sequences
Seq C1 exon
GTGAAAAAGGGACAGGGAAATCAACTCAGAAGCCATTACATTATAAGAGCTGTCTCTTTCATAGAGTTGTCAAGGATTTCATGGTTCAGGGTGGTGACTTCAGTGAAG
Seq A exon
GTGAGATTTTGAGTCCTATAAAAGACACGACATATTTTTTGTTAAACATAAAGGTTTTGGGTAGTGTGTGTTGTACAGGGAAATGGAGAACAGAGGACAATTTACAAGAGTCAGTCCTCTTGTTATTGAAATTATATTGATGTCTTATAATTTGTTGTGTTCCTTTGAGTGTTATTGGTGCAGAATCATTTGTATACATACTTGATGAGAAGTATTTGACTGCGTTTACTATCCTGAGTTCTAAGAGTGTTTTTCATAACTAG
Seq C2 exon
GGAATGGAAGAGGAGGAGAATCTATTTATGGAGGATTCTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042133-Ppig:NM_001081086:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=FE(21.7=100)
A:
NA
C2:
PF0016016=Pro_isomerase=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAAAAGGGACAGGGAAATCA
R:
TCCTCCATAAATAGATTCTCCTCCT
Band lengths:
143-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: