HsaINT0130260 @ hg19
Intron Retention
Gene
ENSG00000138398 | PPIG
Description
peptidylprolyl isomerase G (cyclophilin G) [Source:HGNC Symbol;Acc:14650]
Coordinates
chr2:170462549-170463658:+
Coord C1 exon
chr2:170462549-170462656
Coord A exon
chr2:170462657-170463613
Coord C2 exon
chr2:170463614-170463658
Length
957 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
AGTATGTTTTTCATTTTTAGGAA
3' ss Score
10.13
Exon sequences
Seq C1 exon
GTGAAAAGGGGACCGGGAAATCAACTCAGAAACCATTACATTATAAGAGTTGTCTCTTTCACAGAGTTGTCAAGGATTTTATGGTTCAAGGTGGTGACTTCAGTGAAG
Seq A exon
GTGAGACTTGGAAAAATCATGTATTATTTTCTGTTAAATATCACAGATCTCAAAGTTAGACAAGTCCCTAGAAGTTTTAGTCCAATATTCTTGTCACTCTCACTCCATTTAATCTTTGGTCAATTAGAAGTACTCATAGAAATATGTAAAAGAAGGAAGCTCATAGGCTGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAGTAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCTGCCTCTACTAAAAATAGAAAAATTTGCTGGGCATGATGGCACGTGGCTGTAGTCCCAGCTACTTGAGAGGCTGAGGCAGGAGAATGGCTTGAACCCGAAAGGTGGAAGTTGCGGTGAGCTGAGATTGTGCCACTGCACTCCGGCCTGAATGACAGAGCAAGACTCTGTCTCAAAAAAAAAAAAAAAAAGAAGGAAGCTCATAGAAAATAATTTTGCCTTTGACACATGAATTTCAGAAATAGGCTTCTGGATACAAAACAACACTGCATTCATCTCAGTAATCTGTCAAGTGTTTCTGTTTGATTTTGTCACAAGTGGTAATCCTTACTACAATAAAAATTTTTACTTTTTTATTGTAAAAATATCAAAACTATAGTTTTAAAAAACTTTGAAAAAATGTTAACCTGTTGCAAGACCTGCATAATCATAATTAGAATCTGAAAGTTCTTTTTTAAAATATATTTTAATAGTCTTCGTCACATTCTTGCTATCATAGCATAGGGGAAAGAAAGTAATTTGGGACCTTGTCGTTATTGACATTAATATCTTTTATGATTTGCTGCAATCTTCGAATATTGTTAATTCAAAATTATTCAAAAATCTACTTTACAAGAAGTATTTTGTTTAGGTATCACCTTTGAGGAGCTTACTGAGAGTTATAAGAGTATGTTTTTCATTTTTAG
Seq C2 exon
GAAATGGACGAGGAGGGGAATCTATCTATGGAGGATTTTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138398-PPIG:NM_004792:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.009
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=PD(25.0=85.7)
A:
NA
C2:
PF0016016=Pro_isomerase=FE(9.0=100),PF062177=GAGA_bind=PU(7.7=87.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)