DreINT0123190 @ danRer10
Intron Retention
Gene
ENSDARG00000019797 | qrich1
Description
glutamine-rich 1 [Source:ZFIN;Acc:ZDB-GENE-030131-8204]
Coordinates
chr11:17870770-17872799:-
Coord C1 exon
chr11:17872640-17872799
Coord A exon
chr11:17870925-17872639
Coord C2 exon
chr11:17870770-17870924
Length
1715 bp
Sequences
Splice sites
5' ss Seq
GACGTGAGT
5' ss Score
9.22
3' ss Seq
ACCTCCGTTTGTCTCTGCAGGTC
3' ss Score
13.27
Exon sequences
Seq C1 exon
GCGCAGACCGAGGCAGAGCCACAGGTAGAGCCTCCTCCTGAGCTGGTCCTCCCAAACACGCTGAAGCCTGAGGACGGGCTAGAGGTCTGGAGGCTTTGGGTTCAGCGCAAAAATGCTGAGCTGGACAAAAATGAACAAAATAAGCTGGCACCTATTGGAC
Seq A exon
GTGAGTTTACTTTTTCACTTTTTTTTTTCTCTCCTTTTCATGATGCTGCTCAATCTAGGCTTGTCACAATCTGAAACCTTCAGTAGCATGTAGCAAAATGAGTAAAATTTTTAGATTCAGTACAAGAGCCTTATATAAAGATTACAAAATTTATCTAAGGCTATGACGTTGACAATTTTCAACTAAAACCAAATTGTTTCTGATTAGCAACTTCTCTTGAATAAAGTGATTAAATGTGAAAAAACAAAATCAACGTTTTTGAAATTTAAGCAATTAGCTGTTTTTTCAAGATTAACTGTTCAATATACTTTTTTTTACTAGTACAGTTTTTCAACATTGACTTTATTTTATTGTATTATTCACAATATGTATTATTATTTCATCTGATTCACTAGAGATGAAAGTGTCATTTCAAATGACCGTTTATATACTGTGTCTGTCTGTCTCTGTGTGTGTATGTAATTAGATTGACTTGAAAGTGACTTGCTAGACCAAGCTACGACTTGACGTGACTTGAAATAAGCAATGACTTGACTTGACTTGACTTGACTTGCTTGATACTTGAAGGTTATGACTTGAAACTTACTTGTGACTTGCACATGTGTGACTTACTTCAACCTCTGGCAAATAATATAAATATTACTTATTTATTATTTATTTGGTAAACAAAGCAAATCTCTCATATAATATATCTACTAAAAGATAGAAAATATTACTGTACAAACTGCATTGTACATAAATCAAATGAAAATTGTTATATTAGTCAATAATATTACTGTACTTAATTAAAAAAAAACAAATAAATATAGACTTACTCAAGTAAAAGAACAGAATTAATGATGGGCTGAAAAATCTGCAGAATTCTGCGCTTGCAGATTCTGTGTGGGCCTTGTGTTAAGCAATTTGGCTGTTTGCACCAGACGAAACACCACAGAAATTTAAATACAGCCATTCAGAAGTACAGAATAGTACACTTACTGAATGAAATGGTATGATTTATAATCTAAATAAAACATATCAAACCTCTTTAACGTTAATAAATGTACATGCTGAATCACTGATATGTGTTGGCTTGCACAAGTTCACAGTTGTCAGTTCTAAAGTTCAATTTCAAATGGTTTATTTTATTTTCAAGATCTAAGGTGAACTATGAGCTTCTGCTTTCAATAGTATGATAATAAATGTCATGTAAAATGGCATTTAAACTCACATTATTAGCATTTAACACTGAATAAAGCACATGAGGTGTACCTGAGCTGATCATTGTCATTTTGTTCTGTTGTTCAGCTGCAAGAAATAAAAGCTGTTTCTAAAGTATAAAATTCGGATGTTTTTTTTAGGACAAAAACTCATTTTAATATGGAAAATATTCCTTCTATCGCATGCTTTTGCTTTTATTTAGAATATGGTTTAAATCTGTCTTAAATCAGCCTTTAGCTTGACAGTCAGGCACACTGCTGTTGGCAATCTGGCAACCTGCGATTATGTGTCTTTTTAACCAGGAGTGTAAATACCTTGTTCGACCACTGGGTGTCAAACTTACATACTGCACCTTTAAGTATGAACTGCTTTGGAAGTGAAAATAAAGAGTTTACTCTAGATTGTTGAAAAAGAGCTTAACAGATTCTCCGAAACTTACAGAGCTATGACCTATTTTTGTTAAGCCTCCAAAGACGTTCACATGCGCTAAAATAAACCTCCGTTTGTCTCTGCAG
Seq C2 exon
GTCGACAGCCGCTGCGCTTCCAGGACGATCTTGTGTCGAGTTCAGTGGGAGAGTTGAACCTGGCTCTGTCCCTGATGACTCAAGAGGCCCGTGGGCTGGAGGGAGAGCTGTTCGAACCCGATTCATTATACTATGTATTTTTATGTATACAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019797:ENSDART00000040171:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.519 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCCACAGGTAGAGCCTC
R:
TTCGAACAGCTCTCCCTCCAG
Band lengths:
263-1978
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]