RnoINT0121232 @ rn6
Intron Retention
Gene
ENSRNOG00000025071 | Qrich1
Description
glutamine-rich 1 [Source:RGD Symbol;Acc:1311095]
Coordinates
chr8:117332211-117333100:+
Coord C1 exon
chr8:117332211-117332388
Coord A exon
chr8:117332389-117332945
Coord C2 exon
chr8:117332946-117333100
Length
557 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
3' ss Seq
CCTTAGGACTTGTATTGTAGGGC
3' ss Score
3.99
Exon sequences
Seq C1 exon
GCACAAACTGTTCAGGTCGCTGAAGTTGAGCCACAGTCACAACCGCAGCCTTCACCAGAGCTTTTGCTTCCAAATTCACTGAAGCCAGAAGAAGGGCTAGAAGTATGGAAAAACTGGGCTCAGACCAAGAATGCTGAACTAGAAAAGGATGCTCAAAACAGATTGGCCCCCATTGGGA
Seq A exon
GTGAGTGTTTGGGAGGGAGAGGATGATGGGTGTGTCAAAATGTAAGTACAAGAAAAACAATCCAGGCAGGTAGCACCCCCCTGGCTCTAAGGACTGAAGAATATACTTGGAAGTATACTTTGTGTCAACGATGAACAGGATACAGTCTTCACCTCATGAATGAGCAGGGTTCATAGGATCGCCTGAGACCAGATTTTTAGATCTGTGTGTTTCAGAACGAAAGAAGAATGGCTTCTGGAGGACCTGGGAGCTGCCAGTGGGTTGTATTTAAGCCTGTCTAAGCTTGGACTCATTTACTTGCTCATAGTACAGAGTGTGGTTGCTGGAGTTTTCTACTTACATTTCTTGGCTCTTAGAGTAAAGAATTTATTGGTGAAATAGCATATGTTAGTATATTAATAGGGAAGTTCTGATCACAGATCTAAGTGGACATTTCTAACCTGAACCCTAGTGGGCAATATCCTCTCTGAGCCCTCCTTTCAACAATGTGATTAACCAGTTAGGGCAGCACTGTCGCCATGCCAGGACTCCCATTCACCTTAGGACTTGTATTGTAG
Seq C2 exon
GGCGCCAGTTGCTACGATTCCAAGAAGATCTGATCTCATCTGCTGTGGCTGAATTGAATTATGGCCTTTGTTTAATGACACGAGAAGCTCGGAATGGAGAAGGTGAACCCTATGACCCAGATGTACTCTACTACATTTTCTTGTGTATACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025071:ENSRNOT00000064571:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAAACTGTTCAGGTCGCT
R:
GAAAATGTAGTAGAGTACATCTGGGT
Band lengths:
318-875
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]