HsaINT0135758 @ hg38
Intron Retention
Gene
ENSG00000198218 | QRICH1
Description
glutamine rich 1 [Source:HGNC Symbol;Acc:HGNC:24713]
Coordinates
chr3:49046425-49047246:-
Coord C1 exon
chr3:49047069-49047246
Coord A exon
chr3:49046580-49047068
Coord C2 exon
chr3:49046425-49046579
Length
489 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
3' ss Seq
TTTTGAGGCTTCCGTTGCAGGGC
3' ss Score
6.87
Exon sequences
Seq C1 exon
GCTCAAACTGTCCAGGTTGCTGAAGTTGAACCACAGTCACAGCCACAGCCTTCCCCAGAACTTCTGCTTCCAAATTCTTTGAAGCCAGAAGAAGGGCTTGAAGTATGGAAAAACTGGGCCCAGACCAAGAATGCTGAACTAGAGAAGGATGCTCAGAACAGATTGGCACCCATTGGGA
Seq A exon
GTGAGTGTCTTGGAAGAAGAGTGGGCTGTGTCTAAAATGCAATGGTACTAAAGTAACAGGAGGACAAAATGCCAGAAAAGTGGTGTCTCCTGTCTTGGGGACAAGAGAGCAACATCTGTAATAGTATGTTGAATTCAAGCCTAGTAACAAGCAGTACTGACCTTGTGTACATAATAAGCAGGATATGTGGGGTTTGCCCAAAACCAGGCATTTTTAGACATACGGGTTTCAGGAGTTGACCCTACCAGACCTAAGCAGAGTGGCTTCTGGGAGGAAATGGGAACCAGGGATAGGCACTCAAGCCCTTCTTTCTTGGCATTAGGCTCATATACTCATGTTATAGGCCAGTTCTGACATTACAGGCATGAAACATTCTAGTAGATACAAGTGAGCATTTCTATCCCAGCACCCTGATGGGCAGTATCTGTTCTGAGCCTTCCAGATATGGACCCCCAGGACCTTCATTCATTTTTGAGGCTTCCGTTGCAG
Seq C2 exon
GGCGCCAACTGCTGCGATTCCAGGAAGATCTCATCTCCTCTGCTGTGGCAGAGTTGAATTATGGGCTCTGTCTAATGACACGGGAAGCTCGAAATGGAGAAGGTGAACCCTATGACCCAGATGTGCTCTACTATATTTTCCTGTGTATTCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198218:ENST00000395443:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTCCAGGTTGCTGAAGTTG
R:
ACACAGGAAAATATAGTAGAGCACA
Band lengths:
318-807
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development