MmuINT0130167 @ mm9
Intron Retention
Gene
ENSMUSG00000006673 | Qrich1
Description
glutamine-rich 1 [Source:MGI Symbol;Acc:MGI:1916482]
Coordinates
chr9:108444019-108444917:+
Coord C1 exon
chr9:108444019-108444196
Coord A exon
chr9:108444197-108444762
Coord C2 exon
chr9:108444763-108444917
Length
566 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
3' ss Seq
CCTTAGGACTTGTGTTGCAGGGC
3' ss Score
4.93
Exon sequences
Seq C1 exon
GCACAGACTGTTCAGGTTGCTGAAGTTGAGCCACAGTCACAACCACAGCCTTCACCAGAGCTTTTGCTTCCAAATTCTTTGAAGCCAGAAGAAGGGCTTGAAGTATGGAAAAACTGGGCTCAGACCAAGAATGCTGAACTAGAAAAGGATGCTCAAAACAGATTGGCCCCCATTGGGA
Seq A exon
GTGAGTGTTTGGGAGGGAGAGGATGATGGGGTGTGTCAAAAATGTAAGTACAAGTAAAACAGAATGCAGGCAGGTAGCACCCCTGGCCTTAAGGACTGGAGAATATACTTGGAAGTATACTTTGTGTCATGATGAGCAGTGTCTAGTCTTCACATCATGAGTGAGCAAGATTTATGGGATTGCCCAAGACCAGATTTTTGGATCCCTATGTTTTTAGTTAGCTTCAAGGAAAGGCACCAAAGAAAAATGTCTTTTGGGAAGACCTGGGAGGTGCCAGTGAGTTGTATTTAAACCAGTCTTTGTTTGGGTTCATTTATTTGCTCATAGTACAGCATGGTTGCTGGGGTTTTCTACATATTTCTACTTACAGAAAAGAAACCCGTTGGTGTAATAGCGTATGTTAGTGCATTAATAGGGAAGTTCAGATCACAGATGTAAGTGGACATTCCTAGCCTGAACACTGGTGGGCAACATCCTCTCTGAACCCTCCTTTTAACAATGTGAGTAACAAGTTAGGACATCACTGTTGCCAAGACTCCCATTCACCCTTAGGACTTGTGTTGCAG
Seq C2 exon
GGCGACAGTTGCTACGATTTCAGGAAGATCTGATCTCCTCTGCTGTGGCTGAATTGAATTATGGCCTTTGTTTAATGACACGAGAAGCTCGGAATGGAGAAGGTGAACCCTATGACCCAGATGTACTCTACTACATTTTCCTGTGTATACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006673-Qrich1:NM_001114119:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.403 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGACTGTTCAGGTTGCT
R:
GGAAAATGTAGTAGAGTACATCTGGG
Band lengths:
319-885
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: