MmuINT0130167 @ mm10
Intron Retention
Gene
ENSMUSG00000006673 | Qrich1
Description
glutamine-rich 1 [Source:MGI Symbol;Acc:MGI:1916482]
Coordinates
chr9:108541688-108542586:+
Coord C1 exon
chr9:108541688-108541865
Coord A exon
chr9:108541866-108542431
Coord C2 exon
chr9:108542432-108542586
Length
566 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
3' ss Seq
CCTTAGGACTTGTGTTGCAGGGC
3' ss Score
4.93
Exon sequences
Seq C1 exon
GCACAGACTGTTCAGGTTGCTGAAGTTGAGCCACAGTCACAACCACAGCCTTCACCAGAGCTTTTGCTTCCAAATTCTTTGAAGCCAGAAGAAGGGCTTGAAGTATGGAAAAACTGGGCTCAGACCAAGAATGCTGAACTAGAAAAGGATGCTCAAAACAGATTGGCCCCCATTGGGA
Seq A exon
GTGAGTGTTTGGGAGGGAGAGGATGATGGGGTGTGTCAAAAATGTAAGTACAAGTAAAACAGAATGCAGGCAGGTAGCACCCCTGGCCTTAAGGACTGGAGAATATACTTGGAAGTATACTTTGTGTCATGATGAGCAGTGTCTAGTCTTCACATCATGAGTGAGCAAGATTTATGGGATTGCCCAAGACCAGATTTTTGGATCCCTATGTTTTTAGTTAGCTTCAAGGAAAGGCACCAAAGAAAAATGTCTTTTGGGAAGACCTGGGAGGTGCCAGTGAGTTGTATTTAAACCAGTCTTTGTTTGGGTTCATTTATTTGCTCATAGTACAGCATGGTTGCTGGGGTTTTCTACATATTTCTACTTACAGAAAAGAAACCCGTTGGTGTAATAGCGTATGTTAGTGCATTAATAGGGAAGTTCAGATCACAGATGTAAGTGGACATTCCTAGCCTGAACACTGGTGGGCAACATCCTCTCTGAACCCTCCTTTTAACAATGTGAGTAACAAGTTAGGACATCACTGTTGCCAAGACTCCCATTCACCCTTAGGACTTGTGTTGCAG
Seq C2 exon
GGCGACAGTTGCTACGATTTCAGGAAGATCTGATCTCCTCTGCTGTGGCTGAATTGAATTATGGCCTTTGTTTAATGACACGAGAAGCTCGGAATGGAGAAGGTGAACCCTATGACCCAGATGTACTCTACTACATTTTCCTGTGTATACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006673:ENSMUST00000112155:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.417 A=NA C2=0.004
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGACTGTTCAGGTTGCT
R:
GGAAAATGTAGTAGAGTACATCTGGG
Band lengths:
319-885
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types